Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36005 and BPHYT_RS36010 are separated by 63 nucleotides BPHYT_RS36010 and BPHYT_RS36015 are separated by 58 nucleotides BPHYT_RS36015 and BPHYT_RS36020 are separated by 181 nucleotides BPHYT_RS36020 and BPHYT_RS36025 are separated by 150 nucleotides BPHYT_RS36025 and BPHYT_RS36030 are separated by 50 nucleotides
BPHYT_RS36005: BPHYT_RS36005 - hypothetical protein, at 33,055 to 33,375
_RS36005
BPHYT_RS36010: BPHYT_RS36010 - hypothetical protein, at 33,439 to 33,915
_RS36010
BPHYT_RS36015: BPHYT_RS36015 - hypothetical protein, at 33,974 to 34,153
_RS36015
BPHYT_RS36020: BPHYT_RS36020 - hypothetical protein, at 34,335 to 34,571
_RS36020
BPHYT_RS36025: BPHYT_RS36025 - hypothetical protein, at 34,722 to 35,090
_RS36025
BPHYT_RS36030: BPHYT_RS36030 - hypothetical protein, at 35,141 to 35,560
_RS36030
Position (kb) 34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 33.358 kb on + strand at 33.359 kb on - strand at 33.359 kb on - strand at 33.560 kb on + strand, within BPHYT_RS36010 at 33.774 kb on + strand, within BPHYT_RS36010 at 33.775 kb on - strand, within BPHYT_RS36010 at 33.787 kb on + strand, within BPHYT_RS36010 at 33.787 kb on + strand, within BPHYT_RS36010 at 33.787 kb on + strand, within BPHYT_RS36010 at 33.788 kb on - strand, within BPHYT_RS36010 at 33.847 kb on + strand, within BPHYT_RS36010 at 33.902 kb on + strand at 33.924 kb on - strand at 33.924 kb on - strand at 34.153 kb on + strand at 34.154 kb on - strand at 34.273 kb on - strand at 34.731 kb on - strand at 34.880 kb on + strand, within BPHYT_RS36025 at 34.881 kb on - strand, within BPHYT_RS36025 at 34.881 kb on - strand, within BPHYT_RS36025 at 34.924 kb on - strand, within BPHYT_RS36025 at 35.013 kb on - strand, within BPHYT_RS36025 at 35.013 kb on - strand, within BPHYT_RS36025 at 35.362 kb on - strand, within BPHYT_RS36030 at 35.418 kb on - strand, within BPHYT_RS36030
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 33,358 + +2.3 33,359 - -0.7 33,359 - -2.2 33,560 + BPHYT_RS36010 0.25 -2.8 33,774 + BPHYT_RS36010 0.70 -0.4 33,775 - BPHYT_RS36010 0.70 +0.2 33,787 + BPHYT_RS36010 0.73 +0.5 33,787 + BPHYT_RS36010 0.73 -2.5 33,787 + BPHYT_RS36010 0.73 -0.4 33,788 - BPHYT_RS36010 0.73 -1.6 33,847 + BPHYT_RS36010 0.86 -1.8 33,902 + -1.2 33,924 - -0.2 33,924 - -0.9 34,153 + -0.2 34,154 - -0.4 34,273 - -2.3 34,731 - -0.2 34,880 + BPHYT_RS36025 0.43 -0.8 34,881 - BPHYT_RS36025 0.43 -1.0 34,881 - BPHYT_RS36025 0.43 -1.5 34,924 - BPHYT_RS36025 0.55 -0.5 35,013 - BPHYT_RS36025 0.79 +2.0 35,013 - BPHYT_RS36025 0.79 -0.5 35,362 - BPHYT_RS36030 0.53 +0.3 35,418 - BPHYT_RS36030 0.66 -1.0
Or see this region's nucleotide sequence