Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35680
Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO6 MOI 1 |
---|---|---|---|---|---|
remove | |||||
3,595,722 | + | +2.1 | |||
3,595,744 | - | +0.3 | |||
3,596,208 | + | BPHYT_RS35675 | 0.43 | -0.2 | |
3,596,209 | - | BPHYT_RS35675 | 0.44 | -0.9 | |
3,596,209 | - | BPHYT_RS35675 | 0.44 | -1.6 | |
3,596,968 | + | BPHYT_RS35680 | 0.24 | -0.7 | |
3,597,751 | - | -0.8 | |||
3,597,751 | - | +1.2 | |||
3,597,864 | + | -0.7 | |||
3,597,865 | - | +1.5 |
Or see this region's nucleotide sequence