Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30370

Experiment: 24hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30365 and BPHYT_RS30370 are separated by 56 nucleotidesBPHYT_RS30370 and BPHYT_RS30375 are separated by 52 nucleotides BPHYT_RS30365: BPHYT_RS30365 - beta-lactamase, at 2,367,760 to 2,368,779 _RS30365 BPHYT_RS30370: BPHYT_RS30370 - thioredoxin reductase, at 2,368,836 to 2,370,563 _RS30370 BPHYT_RS30375: BPHYT_RS30375 - hypothetical protein, at 2,370,616 to 2,372,166 _RS30375 Position (kb) 2368 2369 2370 2371Strain fitness (log2 ratio) -1 0 1at 2368.053 kb on + strand, within BPHYT_RS30365at 2368.828 kb on - strandat 2369.776 kb on + strand, within BPHYT_RS30370at 2370.569 kb on + strandat 2370.942 kb on + strand, within BPHYT_RS30375at 2371.274 kb on + strand, within BPHYT_RS30375at 2371.398 kb on - strand, within BPHYT_RS30375

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1
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2,368,053 + BPHYT_RS30365 0.29 +0.2
2,368,828 - -0.5
2,369,776 + BPHYT_RS30370 0.54 -0.1
2,370,569 + -1.3
2,370,942 + BPHYT_RS30375 0.21 -1.7
2,371,274 + BPHYT_RS30375 0.42 -1.1
2,371,398 - BPHYT_RS30375 0.50 -0.7

Or see this region's nucleotide sequence