Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28145 and BPHYT_RS28150 are separated by 199 nucleotides BPHYT_RS28150 and BPHYT_RS28155 are separated by 8 nucleotides BPHYT_RS28155 and BPHYT_RS28160 are separated by 75 nucleotides
BPHYT_RS28145: BPHYT_RS28145 - diguanylate cyclase, at 1,871,952 to 1,873,133
_RS28145
BPHYT_RS28150: BPHYT_RS28150 - methylmalonate-semialdehyde dehydrogenase, at 1,873,333 to 1,874,850
_RS28150
BPHYT_RS28155: BPHYT_RS28155 - hypothetical protein, at 1,874,859 to 1,875,125
_RS28155
BPHYT_RS28160: BPHYT_RS28160 - MFS transporter, at 1,875,201 to 1,876,445
_RS28160
Position (kb) 1873
1874
1875 Strain fitness (log2 ratio) -1
0
1
2 at 1872.391 kb on - strand, within BPHYT_RS28145 at 1872.559 kb on + strand, within BPHYT_RS28145 at 1872.560 kb on - strand, within BPHYT_RS28145 at 1872.560 kb on - strand at 1872.643 kb on + strand, within BPHYT_RS28145 at 1872.781 kb on - strand, within BPHYT_RS28145 at 1873.023 kb on + strand at 1873.024 kb on - strand at 1873.101 kb on - strand at 1873.108 kb on + strand at 1873.109 kb on - strand at 1873.152 kb on - strand at 1873.305 kb on - strand at 1873.406 kb on + strand at 1873.407 kb on - strand at 1873.414 kb on - strand at 1873.581 kb on + strand, within BPHYT_RS28150 at 1874.007 kb on - strand, within BPHYT_RS28150 at 1874.133 kb on - strand, within BPHYT_RS28150 at 1874.565 kb on + strand, within BPHYT_RS28150 at 1874.758 kb on + strand at 1874.759 kb on - strand at 1874.955 kb on - strand, within BPHYT_RS28155 at 1874.967 kb on - strand, within BPHYT_RS28155 at 1875.097 kb on + strand, within BPHYT_RS28155
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 1,872,391 - BPHYT_RS28145 0.37 -0.5 1,872,559 + BPHYT_RS28145 0.51 -0.6 1,872,560 - BPHYT_RS28145 0.51 -1.0 1,872,560 - +1.6 1,872,643 + BPHYT_RS28145 0.58 +0.7 1,872,781 - BPHYT_RS28145 0.70 +0.1 1,873,023 + +0.7 1,873,024 - -0.2 1,873,101 - +0.5 1,873,108 + +0.8 1,873,109 - +0.3 1,873,152 - -0.2 1,873,305 - -0.9 1,873,406 + +2.4 1,873,407 - -0.2 1,873,414 - +1.4 1,873,581 + BPHYT_RS28150 0.16 -1.3 1,874,007 - BPHYT_RS28150 0.44 -1.4 1,874,133 - BPHYT_RS28150 0.53 +0.4 1,874,565 + BPHYT_RS28150 0.81 -1.4 1,874,758 + +0.4 1,874,759 - -0.6 1,874,955 - BPHYT_RS28155 0.36 -0.8 1,874,967 - BPHYT_RS28155 0.40 -1.2 1,875,097 + BPHYT_RS28155 0.89 -0.4
Or see this region's nucleotide sequence