Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27995

Experiment: 24hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27990 and BPHYT_RS27995 are separated by 218 nucleotidesBPHYT_RS27995 and BPHYT_RS28000 are separated by 310 nucleotides BPHYT_RS27990: BPHYT_RS27990 - hypothetical protein, at 1,844,452 to 1,844,763 _RS27990 BPHYT_RS27995: BPHYT_RS27995 - hypothetical protein, at 1,844,982 to 1,845,854 _RS27995 BPHYT_RS28000: BPHYT_RS28000 - permease, at 1,846,165 to 1,847,250 _RS28000 Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -2 -1 0 1at 1844.357 kb on + strandat 1844.771 kb on - strandat 1844.831 kb on + strandat 1844.836 kb on - strandat 1845.121 kb on + strand, within BPHYT_RS27995at 1845.849 kb on - strandat 1845.849 kb on - strandat 1845.855 kb on - strandat 1846.307 kb on - strand, within BPHYT_RS28000at 1846.419 kb on + strand, within BPHYT_RS28000

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1
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1,844,357 + +0.5
1,844,771 - -0.7
1,844,831 + +0.4
1,844,836 - -1.1
1,845,121 + BPHYT_RS27995 0.16 -1.0
1,845,849 - -0.8
1,845,849 - -1.6
1,845,855 - -1.6
1,846,307 - BPHYT_RS28000 0.13 -0.2
1,846,419 + BPHYT_RS28000 0.23 -1.8

Or see this region's nucleotide sequence