Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25155
Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO6 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,214,137 | + | BPHYT_RS25150 | 0.37 | -0.6 | |
1,214,194 | + | BPHYT_RS25150 | 0.42 | -1.9 | |
1,214,240 | - | BPHYT_RS25150 | 0.46 | -1.3 | |
1,214,681 | - | BPHYT_RS25150 | 0.84 | +0.1 | |
1,215,596 | + | BPHYT_RS25155 | 0.34 | +0.1 | |
1,216,258 | - | BPHYT_RS25155 | 0.73 | -0.6 | |
1,216,349 | + | BPHYT_RS25155 | 0.79 | +0.4 | |
1,216,415 | + | BPHYT_RS25155 | 0.82 | +0.6 | |
1,216,488 | + | BPHYT_RS25155 | 0.87 | -0.3 | |
1,216,689 | - | +0.4 | |||
1,216,869 | - | BPHYT_RS25160 | 0.10 | -0.7 | |
1,216,869 | - | BPHYT_RS25160 | 0.10 | -0.9 |
Or see this region's nucleotide sequence