Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23560

Experiment: 24hr PHYTO6 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23555 and BPHYT_RS23560 are separated by 424 nucleotidesBPHYT_RS23560 and BPHYT_RS23565 are separated by 33 nucleotides BPHYT_RS23555: BPHYT_RS23555 - multidrug transporter, at 855,696 to 856,925 _RS23555 BPHYT_RS23560: BPHYT_RS23560 - hypothetical protein, at 857,350 to 857,571 _RS23560 BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398 _RS23565 Position (kb) 857 858Strain fitness (log2 ratio) -2 -1 0 1at 856.471 kb on + strand, within BPHYT_RS23555at 856.493 kb on + strand, within BPHYT_RS23555at 856.926 kb on - strandat 857.005 kb on + strandat 857.005 kb on + strandat 857.072 kb on + strandat 857.233 kb on + strandat 857.308 kb on + strandat 857.671 kb on - strandat 857.728 kb on - strandat 858.160 kb on - strand, within BPHYT_RS23565at 858.201 kb on - strand, within BPHYT_RS23565at 858.449 kb on + strand, within BPHYT_RS23565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1
remove
856,471 + BPHYT_RS23555 0.63 -0.7
856,493 + BPHYT_RS23555 0.65 +0.8
856,926 - -0.3
857,005 + +0.3
857,005 + -0.2
857,072 + -0.8
857,233 + +0.1
857,308 + -1.1
857,671 - -1.9
857,728 - -0.5
858,160 - BPHYT_RS23565 0.31 -1.4
858,201 - BPHYT_RS23565 0.33 +1.5
858,449 + BPHYT_RS23565 0.47 +0.1

Or see this region's nucleotide sequence