Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23545 and BPHYT_RS23550 overlap by 4 nucleotides BPHYT_RS23550 and BPHYT_RS23555 are separated by 15 nucleotides
BPHYT_RS23545: BPHYT_RS23545 - nodulation protein, at 849,238 to 852,558
_RS23545
BPHYT_RS23550: BPHYT_RS23550 - multidrug transporter, at 852,555 to 855,680
_RS23550
BPHYT_RS23555: BPHYT_RS23555 - multidrug transporter, at 855,696 to 856,925
_RS23555
Position (kb) 852
853
854
855
856 Strain fitness (log2 ratio) -1
0
1
2 at 851.879 kb on + strand, within BPHYT_RS23545 at 851.879 kb on + strand, within BPHYT_RS23545 at 852.306 kb on - strand at 852.474 kb on - strand at 852.647 kb on - strand at 853.040 kb on - strand, within BPHYT_RS23550 at 853.040 kb on - strand, within BPHYT_RS23550 at 853.099 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.684 kb on + strand, within BPHYT_RS23550 at 853.738 kb on + strand, within BPHYT_RS23550 at 854.134 kb on + strand, within BPHYT_RS23550 at 855.091 kb on + strand, within BPHYT_RS23550 at 855.529 kb on + strand at 855.697 kb on + strand at 855.698 kb on - strand at 855.740 kb on + strand at 855.930 kb on - strand, within BPHYT_RS23555 at 855.930 kb on - strand, within BPHYT_RS23555 at 855.949 kb on + strand, within BPHYT_RS23555 at 855.950 kb on - strand, within BPHYT_RS23555 at 856.318 kb on + strand, within BPHYT_RS23555 at 856.318 kb on + strand, within BPHYT_RS23555 at 856.319 kb on - strand, within BPHYT_RS23555 at 856.471 kb on + strand, within BPHYT_RS23555 at 856.493 kb on + strand, within BPHYT_RS23555
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 851,879 + BPHYT_RS23545 0.80 +0.3 851,879 + BPHYT_RS23545 0.80 +0.7 852,306 - +0.1 852,474 - -0.4 852,647 - -0.2 853,040 - BPHYT_RS23550 0.16 -0.0 853,040 - BPHYT_RS23550 0.16 -0.3 853,099 + BPHYT_RS23550 0.17 -0.0 853,639 + BPHYT_RS23550 0.35 -0.7 853,639 + BPHYT_RS23550 0.35 +0.4 853,639 + BPHYT_RS23550 0.35 +1.7 853,639 + BPHYT_RS23550 0.35 +0.9 853,684 + BPHYT_RS23550 0.36 +0.0 853,738 + BPHYT_RS23550 0.38 -0.9 854,134 + BPHYT_RS23550 0.51 +2.3 855,091 + BPHYT_RS23550 0.81 +0.1 855,529 + -0.4 855,697 + +0.5 855,698 - -1.6 855,740 + +0.1 855,930 - BPHYT_RS23555 0.19 +0.8 855,930 - BPHYT_RS23555 0.19 -1.6 855,949 + BPHYT_RS23555 0.21 +0.4 855,950 - BPHYT_RS23555 0.21 -0.7 856,318 + BPHYT_RS23555 0.51 -0.8 856,318 + BPHYT_RS23555 0.51 +2.3 856,319 - BPHYT_RS23555 0.51 +1.2 856,471 + BPHYT_RS23555 0.63 -0.7 856,493 + BPHYT_RS23555 0.65 +0.8
Or see this region's nucleotide sequence