Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23195 and BPHYT_RS23200 are separated by 319 nucleotides BPHYT_RS23200 and BPHYT_RS23205 are separated by 183 nucleotides BPHYT_RS23205 and BPHYT_RS23210 are separated by 78 nucleotides
BPHYT_RS23195: BPHYT_RS23195 - cytochrome P460, at 769,494 to 770,513
_RS23195
BPHYT_RS23200: BPHYT_RS23200 - cupin, at 770,833 to 771,249
_RS23200
BPHYT_RS23205: BPHYT_RS23205 - alkylhydroperoxidase, at 771,433 to 772,038
_RS23205
BPHYT_RS23210: BPHYT_RS23210 - MFS transporter, at 772,117 to 773,367
_RS23210
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 770.493 kb on - strand at 770.672 kb on + strand at 771.111 kb on + strand, within BPHYT_RS23200 at 771.113 kb on + strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.322 kb on + strand at 771.391 kb on - strand at 771.404 kb on + strand at 771.405 kb on - strand at 771.691 kb on + strand, within BPHYT_RS23205 at 771.988 kb on + strand at 772.503 kb on - strand, within BPHYT_RS23210 at 772.876 kb on + strand, within BPHYT_RS23210
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 770,493 - -0.9 770,672 + -0.4 771,111 + BPHYT_RS23200 0.67 -3.0 771,113 + BPHYT_RS23200 0.67 -0.5 771,114 - BPHYT_RS23200 0.67 +0.6 771,114 - BPHYT_RS23200 0.67 +0.5 771,114 - BPHYT_RS23200 0.67 -0.1 771,114 - BPHYT_RS23200 0.67 +0.2 771,322 + -0.3 771,391 - +0.0 771,404 + +2.2 771,405 - -0.6 771,691 + BPHYT_RS23205 0.43 -0.8 771,988 + -1.0 772,503 - BPHYT_RS23210 0.31 -2.4 772,876 + BPHYT_RS23210 0.61 +0.0
Or see this region's nucleotide sequence