Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22360 and BPHYT_RS22365 are separated by 24 nucleotides BPHYT_RS22365 and BPHYT_RS22370 are separated by 75 nucleotides
BPHYT_RS22360: BPHYT_RS22360 - response regulator receiver, at 572,982 to 573,944
_RS22360
BPHYT_RS22365: BPHYT_RS22365 - membrane protein, at 573,969 to 575,411
_RS22365
BPHYT_RS22370: BPHYT_RS22370 - alpha/beta hydrolase, at 575,487 to 576,452
_RS22370
Position (kb) 573
574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 572.982 kb on - strand at 573.052 kb on - strand at 573.541 kb on - strand, within BPHYT_RS22360 at 573.541 kb on - strand, within BPHYT_RS22360 at 573.861 kb on + strand at 573.892 kb on + strand at 573.893 kb on - strand at 573.973 kb on - strand at 573.973 kb on - strand at 574.023 kb on + strand at 574.028 kb on - strand at 574.028 kb on - strand at 574.168 kb on - strand, within BPHYT_RS22365 at 574.200 kb on + strand, within BPHYT_RS22365 at 574.260 kb on + strand, within BPHYT_RS22365 at 574.286 kb on - strand, within BPHYT_RS22365 at 574.512 kb on + strand, within BPHYT_RS22365 at 574.524 kb on + strand, within BPHYT_RS22365 at 574.525 kb on - strand, within BPHYT_RS22365 at 574.753 kb on - strand, within BPHYT_RS22365 at 575.097 kb on - strand, within BPHYT_RS22365 at 575.181 kb on + strand, within BPHYT_RS22365 at 575.652 kb on - strand, within BPHYT_RS22370 at 575.652 kb on - strand, within BPHYT_RS22370 at 575.817 kb on + strand, within BPHYT_RS22370 at 575.907 kb on + strand, within BPHYT_RS22370 at 575.916 kb on + strand, within BPHYT_RS22370 at 575.916 kb on + strand, within BPHYT_RS22370 at 576.347 kb on - strand, within BPHYT_RS22370
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 572,982 - +3.4 573,052 - +1.0 573,541 - BPHYT_RS22360 0.58 -2.6 573,541 - BPHYT_RS22360 0.58 +0.3 573,861 + +1.5 573,892 + +2.3 573,893 - -0.3 573,973 - +0.2 573,973 - +0.4 574,023 + -1.9 574,028 - -0.5 574,028 - -0.2 574,168 - BPHYT_RS22365 0.14 -1.5 574,200 + BPHYT_RS22365 0.16 -0.9 574,260 + BPHYT_RS22365 0.20 +1.1 574,286 - BPHYT_RS22365 0.22 +1.4 574,512 + BPHYT_RS22365 0.38 -1.5 574,524 + BPHYT_RS22365 0.38 +0.8 574,525 - BPHYT_RS22365 0.39 -1.2 574,753 - BPHYT_RS22365 0.54 -0.6 575,097 - BPHYT_RS22365 0.78 -1.2 575,181 + BPHYT_RS22365 0.84 -0.7 575,652 - BPHYT_RS22370 0.17 +0.4 575,652 - BPHYT_RS22370 0.17 +1.0 575,817 + BPHYT_RS22370 0.34 +1.1 575,907 + BPHYT_RS22370 0.43 +0.1 575,916 + BPHYT_RS22370 0.44 -0.5 575,916 + BPHYT_RS22370 0.44 -0.7 576,347 - BPHYT_RS22370 0.89 -1.0
Or see this region's nucleotide sequence