Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21310 and BPHYT_RS21315 are separated by 628 nucleotides BPHYT_RS21315 and BPHYT_RS21320 are separated by 216 nucleotides
BPHYT_RS21310: BPHYT_RS21310 - porin, at 339,621 to 340,772
_RS21310
BPHYT_RS21315: BPHYT_RS21315 - hypothetical protein, at 341,401 to 341,937
_RS21315
BPHYT_RS21320: BPHYT_RS21320 - alkaline phosphatase, at 342,154 to 344,106
_RS21320
Position (kb) 341
342 Strain fitness (log2 ratio) -2
-1
0
1 at 340.409 kb on - strand, within BPHYT_RS21310 at 340.427 kb on - strand, within BPHYT_RS21310 at 340.454 kb on - strand, within BPHYT_RS21310 at 340.454 kb on - strand, within BPHYT_RS21310 at 340.603 kb on + strand, within BPHYT_RS21310 at 340.603 kb on + strand, within BPHYT_RS21310 at 340.604 kb on - strand, within BPHYT_RS21310 at 340.604 kb on - strand, within BPHYT_RS21310 at 340.693 kb on + strand at 340.693 kb on + strand at 340.694 kb on - strand at 340.694 kb on - strand at 340.781 kb on - strand at 340.812 kb on - strand at 340.978 kb on + strand at 341.052 kb on - strand at 341.127 kb on + strand at 341.245 kb on + strand at 341.245 kb on + strand at 341.245 kb on + strand at 341.727 kb on + strand, within BPHYT_RS21315 at 341.809 kb on + strand, within BPHYT_RS21315 at 341.833 kb on - strand, within BPHYT_RS21315 at 341.833 kb on - strand, within BPHYT_RS21315 at 341.872 kb on - strand, within BPHYT_RS21315 at 341.872 kb on - strand, within BPHYT_RS21315 at 342.010 kb on + strand at 342.010 kb on + strand at 342.014 kb on - strand at 342.014 kb on - strand at 342.026 kb on + strand at 342.028 kb on + strand at 342.029 kb on - strand at 342.048 kb on - strand at 342.048 kb on - strand at 342.439 kb on + strand, within BPHYT_RS21320 at 342.440 kb on - strand, within BPHYT_RS21320 at 342.571 kb on + strand, within BPHYT_RS21320 at 342.703 kb on + strand, within BPHYT_RS21320 at 342.703 kb on + strand, within BPHYT_RS21320 at 342.704 kb on - strand, within BPHYT_RS21320 at 342.781 kb on + strand, within BPHYT_RS21320 at 342.796 kb on - strand, within BPHYT_RS21320
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 340,409 - BPHYT_RS21310 0.68 -0.8 340,427 - BPHYT_RS21310 0.70 -0.7 340,454 - BPHYT_RS21310 0.72 -0.3 340,454 - BPHYT_RS21310 0.72 -0.3 340,603 + BPHYT_RS21310 0.85 -1.4 340,603 + BPHYT_RS21310 0.85 -0.4 340,604 - BPHYT_RS21310 0.85 -1.8 340,604 - BPHYT_RS21310 0.85 -1.9 340,693 + +0.4 340,693 + -0.7 340,694 - +1.0 340,694 - +0.3 340,781 - +0.1 340,812 - -1.0 340,978 + +0.2 341,052 - -0.4 341,127 + -0.4 341,245 + -0.5 341,245 + +0.2 341,245 + -0.3 341,727 + BPHYT_RS21315 0.61 +0.4 341,809 + BPHYT_RS21315 0.76 -0.9 341,833 - BPHYT_RS21315 0.80 -2.1 341,833 - BPHYT_RS21315 0.80 -0.4 341,872 - BPHYT_RS21315 0.88 -1.8 341,872 - BPHYT_RS21315 0.88 +0.3 342,010 + +1.3 342,010 + +0.4 342,014 - +0.7 342,014 - +0.7 342,026 + -0.2 342,028 + +0.5 342,029 - -0.0 342,048 - -0.7 342,048 - -0.9 342,439 + BPHYT_RS21320 0.15 -0.5 342,440 - BPHYT_RS21320 0.15 -1.7 342,571 + BPHYT_RS21320 0.21 -1.1 342,703 + BPHYT_RS21320 0.28 +0.4 342,703 + BPHYT_RS21320 0.28 -1.0 342,704 - BPHYT_RS21320 0.28 -1.0 342,781 + BPHYT_RS21320 0.32 +0.3 342,796 - BPHYT_RS21320 0.33 +0.9
Or see this region's nucleotide sequence