Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21030

Experiment: 24hr PHYTO6 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS21030 and BPHYT_RS21035 are separated by 63 nucleotides BPHYT_RS21030: BPHYT_RS21030 - ABC transporter ATP-binding protein, at 277,858 to 279,399 _RS21030 BPHYT_RS21035: BPHYT_RS21035 - ABC transporter permease, at 279,463 to 280,617 _RS21035 Position (kb) 277 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 277.275 kb on + strandat 277.567 kb on + strandat 277.989 kb on + strandat 278.018 kb on - strand, within BPHYT_RS21030at 278.140 kb on - strand, within BPHYT_RS21030at 278.319 kb on - strand, within BPHYT_RS21030at 279.098 kb on + strand, within BPHYT_RS21030at 279.424 kb on - strandat 279.520 kb on - strandat 279.723 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.219 kb on + strand, within BPHYT_RS21035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1
remove
277,275 + +1.3
277,567 + +1.3
277,989 + -0.2
278,018 - BPHYT_RS21030 0.10 -2.2
278,140 - BPHYT_RS21030 0.18 -0.4
278,319 - BPHYT_RS21030 0.30 -2.0
279,098 + BPHYT_RS21030 0.80 +0.7
279,424 - +2.0
279,520 - -1.5
279,723 - BPHYT_RS21035 0.23 -0.2
280,018 - BPHYT_RS21035 0.48 -0.6
280,018 - BPHYT_RS21035 0.48 -0.6
280,219 + BPHYT_RS21035 0.65 +0.8

Or see this region's nucleotide sequence