Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20705

Experiment: 24hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20700 and BPHYT_RS20705 are separated by 471 nucleotidesBPHYT_RS20705 and BPHYT_RS20710 are separated by 2 nucleotidesBPHYT_RS20710 and BPHYT_RS20715 are separated by 2 nucleotides BPHYT_RS20700: BPHYT_RS20700 - nucleoside hydrolase, at 204,523 to 205,626 _RS20700 BPHYT_RS20705: BPHYT_RS20705 - Chase2 sensor protein, at 206,098 to 207,810 _RS20705 BPHYT_RS20710: BPHYT_RS20710 - hypothetical protein, at 207,813 to 208,193 _RS20710 BPHYT_RS20715: BPHYT_RS20715 - peptidase, at 208,196 to 209,902 _RS20715 Position (kb) 206 207 208Strain fitness (log2 ratio) -1 0 1at 205.263 kb on + strand, within BPHYT_RS20700at 206.343 kb on + strand, within BPHYT_RS20705at 207.109 kb on + strand, within BPHYT_RS20705at 207.109 kb on + strand, within BPHYT_RS20705at 207.109 kb on + strand, within BPHYT_RS20705at 207.731 kb on + strandat 207.933 kb on + strand, within BPHYT_RS20710at 207.934 kb on - strand, within BPHYT_RS20710at 207.966 kb on + strand, within BPHYT_RS20710at 208.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1
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205,263 + BPHYT_RS20700 0.67 +0.3
206,343 + BPHYT_RS20705 0.14 +0.3
207,109 + BPHYT_RS20705 0.59 +0.3
207,109 + BPHYT_RS20705 0.59 -0.4
207,109 + BPHYT_RS20705 0.59 +0.2
207,731 + +0.7
207,933 + BPHYT_RS20710 0.31 +0.1
207,934 - BPHYT_RS20710 0.32 -0.4
207,966 + BPHYT_RS20710 0.40 -0.5
208,242 + -0.7

Or see this region's nucleotide sequence