Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18965

Experiment: 24hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18960 and BPHYT_RS18965 are separated by 1 nucleotidesBPHYT_RS18965 and BPHYT_RS18970 are separated by 86 nucleotides BPHYT_RS18960: BPHYT_RS18960 - chemotaxis protein CheZ, at 4,259,168 to 4,259,878 _RS18960 BPHYT_RS18965: BPHYT_RS18965 - chemotaxis protein CheY, at 4,259,880 to 4,260,275 _RS18965 BPHYT_RS18970: BPHYT_RS18970 - chemotaxis protein, at 4,260,362 to 4,261,450 _RS18970 Position (kb) 4259 4260 4261Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4258.937 kb on + strandat 4258.937 kb on + strandat 4258.937 kb on + strandat 4258.937 kb on + strandat 4258.938 kb on - strandat 4258.938 kb on - strandat 4258.938 kb on - strandat 4258.938 kb on - strandat 4258.938 kb on - strandat 4258.949 kb on - strandat 4259.046 kb on + strandat 4259.047 kb on - strandat 4259.047 kb on - strandat 4259.047 kb on - strandat 4259.049 kb on + strandat 4259.049 kb on + strandat 4259.049 kb on + strandat 4259.049 kb on + strandat 4259.049 kb on + strandat 4259.050 kb on - strandat 4259.050 kb on - strandat 4259.103 kb on + strandat 4259.103 kb on + strandat 4259.103 kb on + strandat 4259.103 kb on + strandat 4259.103 kb on + strandat 4259.103 kb on + strandat 4259.104 kb on - strandat 4259.104 kb on - strandat 4259.104 kb on - strandat 4259.104 kb on - strandat 4259.388 kb on + strand, within BPHYT_RS18960at 4259.389 kb on - strand, within BPHYT_RS18960at 4259.389 kb on - strand, within BPHYT_RS18960at 4259.688 kb on + strand, within BPHYT_RS18960at 4259.689 kb on - strand, within BPHYT_RS18960at 4259.963 kb on - strand, within BPHYT_RS18965at 4260.128 kb on - strand, within BPHYT_RS18965at 4260.131 kb on + strandat 4260.365 kb on + strandat 4260.366 kb on - strandat 4260.491 kb on - strand, within BPHYT_RS18970at 4260.491 kb on - strand, within BPHYT_RS18970at 4260.520 kb on - strand, within BPHYT_RS18970at 4260.520 kb on - strand, within BPHYT_RS18970at 4260.689 kb on - strand, within BPHYT_RS18970at 4260.689 kb on - strand, within BPHYT_RS18970at 4260.689 kb on - strand, within BPHYT_RS18970at 4260.690 kb on + strand, within BPHYT_RS18970at 4260.690 kb on + strand, within BPHYT_RS18970at 4260.691 kb on - strand, within BPHYT_RS18970at 4260.691 kb on - strand, within BPHYT_RS18970at 4260.691 kb on - strand, within BPHYT_RS18970at 4260.741 kb on + strand, within BPHYT_RS18970at 4260.741 kb on + strand, within BPHYT_RS18970at 4260.741 kb on + strand, within BPHYT_RS18970at 4260.741 kb on + strand, within BPHYT_RS18970at 4260.741 kb on + strand, within BPHYT_RS18970at 4260.741 kb on + strand, within BPHYT_RS18970at 4260.742 kb on - strand, within BPHYT_RS18970at 4260.742 kb on - strand, within BPHYT_RS18970at 4260.742 kb on - strand, within BPHYT_RS18970at 4260.742 kb on - strand, within BPHYT_RS18970at 4260.742 kb on - strand, within BPHYT_RS18970at 4260.784 kb on + strand, within BPHYT_RS18970at 4260.791 kb on - strand, within BPHYT_RS18970at 4260.847 kb on + strand, within BPHYT_RS18970at 4260.847 kb on + strand, within BPHYT_RS18970at 4260.847 kb on + strand, within BPHYT_RS18970at 4260.848 kb on - strand, within BPHYT_RS18970at 4260.848 kb on - strand, within BPHYT_RS18970at 4260.848 kb on - strand, within BPHYT_RS18970at 4261.096 kb on - strand, within BPHYT_RS18970

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1
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4,258,937 + -0.8
4,258,937 + +1.7
4,258,937 + -0.2
4,258,937 + -0.0
4,258,938 - -0.8
4,258,938 - -0.5
4,258,938 - -0.3
4,258,938 - -0.1
4,258,938 - -0.9
4,258,949 - -1.8
4,259,046 + -1.2
4,259,047 - -0.1
4,259,047 - +0.1
4,259,047 - +0.1
4,259,049 + -1.1
4,259,049 + +0.1
4,259,049 + -1.5
4,259,049 + -0.2
4,259,049 + -0.1
4,259,050 - -1.0
4,259,050 - -0.7
4,259,103 + +0.7
4,259,103 + -0.9
4,259,103 + +0.3
4,259,103 + -0.5
4,259,103 + -0.4
4,259,103 + +2.3
4,259,104 - +0.1
4,259,104 - +0.0
4,259,104 - +2.8
4,259,104 - -1.2
4,259,388 + BPHYT_RS18960 0.31 -0.2
4,259,389 - BPHYT_RS18960 0.31 +1.9
4,259,389 - BPHYT_RS18960 0.31 -0.1
4,259,688 + BPHYT_RS18960 0.73 -1.0
4,259,689 - BPHYT_RS18960 0.73 -0.8
4,259,963 - BPHYT_RS18965 0.21 +0.1
4,260,128 - BPHYT_RS18965 0.63 -0.5
4,260,131 + -0.6
4,260,365 + +0.4
4,260,366 - -1.2
4,260,491 - BPHYT_RS18970 0.12 -1.0
4,260,491 - BPHYT_RS18970 0.12 +0.3
4,260,520 - BPHYT_RS18970 0.15 -0.3
4,260,520 - BPHYT_RS18970 0.15 -1.3
4,260,689 - BPHYT_RS18970 0.30 +0.4
4,260,689 - BPHYT_RS18970 0.30 +0.3
4,260,689 - BPHYT_RS18970 0.30 -0.5
4,260,690 + BPHYT_RS18970 0.30 +0.0
4,260,690 + BPHYT_RS18970 0.30 +1.3
4,260,691 - BPHYT_RS18970 0.30 -1.1
4,260,691 - BPHYT_RS18970 0.30 +0.3
4,260,691 - BPHYT_RS18970 0.30 +0.6
4,260,741 + BPHYT_RS18970 0.35 -0.1
4,260,741 + BPHYT_RS18970 0.35 -0.2
4,260,741 + BPHYT_RS18970 0.35 +0.3
4,260,741 + BPHYT_RS18970 0.35 +0.4
4,260,741 + BPHYT_RS18970 0.35 +0.9
4,260,741 + BPHYT_RS18970 0.35 +0.0
4,260,742 - BPHYT_RS18970 0.35 +1.4
4,260,742 - BPHYT_RS18970 0.35 -1.4
4,260,742 - BPHYT_RS18970 0.35 -1.2
4,260,742 - BPHYT_RS18970 0.35 -1.0
4,260,742 - BPHYT_RS18970 0.35 -0.6
4,260,784 + BPHYT_RS18970 0.39 -2.5
4,260,791 - BPHYT_RS18970 0.39 -0.4
4,260,847 + BPHYT_RS18970 0.45 +0.2
4,260,847 + BPHYT_RS18970 0.45 -0.0
4,260,847 + BPHYT_RS18970 0.45 -1.1
4,260,848 - BPHYT_RS18970 0.45 -2.3
4,260,848 - BPHYT_RS18970 0.45 -0.2
4,260,848 - BPHYT_RS18970 0.45 +0.0
4,261,096 - BPHYT_RS18970 0.67 +0.1

Or see this region's nucleotide sequence