Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16935

Experiment: 24hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO6 MOI 1
3,839,556	+		BPHYT_RS16930	0.52	-1.2
3,839,557	-		BPHYT_RS16930	0.52	-1.2
3,839,558	+		BPHYT_RS16930	0.52	+0.7
3,839,558	+		BPHYT_RS16930	0.52	-0.1
3,839,558	+		BPHYT_RS16930	0.52	-1.2
3,839,558	+		BPHYT_RS16930	0.52	+1.2
3,839,558	+		BPHYT_RS16930	0.52	-0.8
3,839,558	+		BPHYT_RS16930	0.52	+0.1
3,839,558	+		BPHYT_RS16930	0.52	-1.0
3,839,559	-		BPHYT_RS16930	0.52	+0.0
3,839,559	-		BPHYT_RS16930	0.52	-0.0
3,839,559	-		BPHYT_RS16930	0.52	+1.9
3,839,561	-		BPHYT_RS16930	0.52	+0.9
3,839,563	-		BPHYT_RS16930	0.52	+0.1
3,839,684	+		BPHYT_RS16930	0.60	-0.2
3,839,711	+		BPHYT_RS16930	0.62	+1.0
3,839,711	+		BPHYT_RS16930	0.62	-0.5
3,839,711	+		BPHYT_RS16930	0.62	-0.9
3,839,711	+		BPHYT_RS16930	0.62	-0.8
3,839,711	+		BPHYT_RS16930	0.62	-2.7
3,839,712	-		BPHYT_RS16930	0.62	-1.8
3,839,712	-		BPHYT_RS16930	0.62	-1.5
3,840,135	-		BPHYT_RS16930	0.90	-0.6
3,840,267	+				+0.0
3,840,331	+				-0.1
3,840,345	+				-0.8
3,840,345	+				-0.6
3,840,346	-				-1.2
3,840,346	-				-1.3
3,840,412	+				-0.8
3,840,413	-				-0.1
3,840,543	+		BPHYT_RS16935	0.12	-2.3
3,840,543	+		BPHYT_RS16935	0.12	+1.1
3,840,543	+		BPHYT_RS16935	0.12	-0.6
3,840,543	+		BPHYT_RS16935	0.12	-1.7
3,840,544	-		BPHYT_RS16935	0.12	+0.7
3,840,744	+		BPHYT_RS16935	0.32	-2.1
3,840,924	+		BPHYT_RS16935	0.50	+0.3
3,840,925	-		BPHYT_RS16935	0.50	-2.3
3,841,017	+		BPHYT_RS16935	0.59	-1.0
3,841,017	+		BPHYT_RS16935	0.59	-1.1
3,841,027	+		BPHYT_RS16935	0.60	+0.3
3,841,033	+		BPHYT_RS16935	0.61	-0.9
3,841,444	+				-0.0
3,841,445	-				+0.8
3,841,445	-				-0.7
3,841,445	-				-1.2
3,841,520	+				+0.9
3,841,771	+		BPHYT_RS16940	0.28	-2.2
3,841,772	-		BPHYT_RS16940	0.28	+0.4
3,841,813	+		BPHYT_RS16940	0.33	-1.9
3,842,073	+		BPHYT_RS16940	0.66	-1.8
3,842,073	+		BPHYT_RS16940	0.66	-0.2
3,842,073	+		BPHYT_RS16940	0.66	-1.7
3,842,073	+		BPHYT_RS16940	0.66	-1.5
3,842,074	-		BPHYT_RS16940	0.67	-1.1
3,842,373	+				+0.4
3,842,374	-				-0.8
3,842,419	+		BPHYT_RS16945	0.13	-0.3
3,842,421	+		BPHYT_RS16945	0.13	-0.3
3,842,421	+		BPHYT_RS16945	0.13	+0.0
3,842,422	-		BPHYT_RS16945	0.14	+1.8
3,842,422	-				+2.2