Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13500

Experiment: 24hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO6 MOI 1
3,078,908	+		BPHYT_RS13490	0.45	-1.0
3,078,909	-		BPHYT_RS13490	0.45	-0.3
3,078,981	-		BPHYT_RS13490	0.62	-0.1
3,079,201	+				+1.5
3,079,201	+				+0.3
3,079,202	-				+0.4
3,079,202	-				-0.1
3,079,215	+				+1.0
3,079,216	-				+0.7
3,079,216	-				-2.3
3,079,353	-		BPHYT_RS13495	0.36	+1.3
3,079,743	+				+2.0
3,080,238	-		BPHYT_RS13500	0.33	+0.3
3,080,759	+		BPHYT_RS13500	0.65	+1.6
3,080,759	+		BPHYT_RS13500	0.65	+0.2
3,080,903	-		BPHYT_RS13500	0.73	-2.2
3,081,051	+		BPHYT_RS13500	0.82	-2.2
3,081,052	-		BPHYT_RS13500	0.82	-0.4
3,081,052	-		BPHYT_RS13500	0.82	+0.2
3,081,054	-		BPHYT_RS13500	0.82	+0.2
3,081,054	-		BPHYT_RS13500	0.82	-1.0
3,081,282	-				-0.6
3,081,327	-				+0.1
3,081,327	-				+0.1
3,081,411	-				+0.4
3,081,569	+		BPHYT_RS13505	0.24	+0.2
3,081,588	+		BPHYT_RS13505	0.26	-1.1
3,081,611	-		BPHYT_RS13505	0.29	+0.5
3,081,815	+		BPHYT_RS13505	0.51	+0.4
3,081,817	+		BPHYT_RS13505	0.51	-1.5
3,081,818	-		BPHYT_RS13505	0.51	+0.8
3,081,818	-		BPHYT_RS13505	0.51	-1.3
3,082,312	-				-1.1