Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11105
Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO6 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,522,439 | + | -0.8 | |||
2,522,439 | + | -0.3 | |||
2,522,687 | - | BPHYT_RS11100 | 0.41 | +0.5 | |
2,523,022 | + | -0.2 | |||
2,523,251 | + | BPHYT_RS11105 | 0.16 | -0.5 | |
2,523,311 | + | BPHYT_RS11105 | 0.21 | +1.9 | |
2,523,540 | + | BPHYT_RS11105 | 0.40 | -0.2 | |
2,523,544 | + | BPHYT_RS11105 | 0.41 | +0.3 | |
2,524,647 | + | BPHYT_RS11110 | 0.10 | -0.9 | |
2,524,907 | - | BPHYT_RS11110 | 0.24 | -0.3 |
Or see this region's nucleotide sequence