Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05955

Experiment: 24hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO6 MOI 1
1,354,442	-		BPHYT_RS05950	0.80	-0.1
1,354,443	+		BPHYT_RS05950	0.80	+2.3
1,354,443	+		BPHYT_RS05950	0.80	+0.5
1,354,443	+		BPHYT_RS05950	0.80	-2.1
1,354,443	+		BPHYT_RS05950	0.80	-1.3
1,354,443	+		BPHYT_RS05950	0.80	-0.7
1,354,443	+		BPHYT_RS05950	0.80	-0.0
1,354,443	+		BPHYT_RS05950	0.80	+0.3
1,354,444	-		BPHYT_RS05950	0.80	+0.0
1,354,444	-		BPHYT_RS05950	0.80	-0.2
1,354,444	-		BPHYT_RS05950	0.80	-1.9
1,354,445	+		BPHYT_RS05950	0.80	+0.1
1,354,445	+		BPHYT_RS05950	0.80	-0.3
1,354,445	+		BPHYT_RS05950	0.80	+0.5
1,354,445	+		BPHYT_RS05950	0.80	-1.0
1,354,446	-		BPHYT_RS05950	0.80	-0.2
1,354,667	-		BPHYT_RS05950	0.89	-0.6
1,354,818	-				+0.6
1,355,032	+				+0.4
1,355,033	-				+0.3
1,355,033	-				+1.8
1,355,072	+				+1.0
1,355,082	+				-0.5
1,355,083	-				-0.3
1,355,085	+				+1.1
1,355,086	-				+2.3
1,355,086	-				-1.0
1,355,089	+				+0.1
1,355,089	+				-1.7
1,355,090	-				-0.3
1,355,090	-				-0.0
1,355,090	-				-0.8
1,355,128	+				+0.1
1,355,128	+				+0.2
1,355,304	+				+0.2
1,355,305	-				-0.1
1,355,543	-		BPHYT_RS05955	0.15	-0.3
1,355,763	+		BPHYT_RS05955	0.39	+0.6
1,355,865	+		BPHYT_RS05955	0.51	-0.4
1,356,115	+		BPHYT_RS05955	0.79	-0.1
1,356,265	-				-0.8
1,356,265	-				+1.2
1,356,265	-				-0.5
1,356,334	+				+0.3
1,356,365	+				-0.1
1,356,365	+				-1.0
1,356,366	-				-1.0
1,356,366	-				+0.2
1,356,374	-				+1.6
1,356,470	+				+1.3
1,356,478	+				+0.4
1,356,479	-				-1.1
1,356,837	+		BPHYT_RS05960	0.76	-0.1
1,356,837	+		BPHYT_RS05960	0.76	-0.6
1,356,838	-		BPHYT_RS05960	0.76	-0.2
1,356,838	-		BPHYT_RS05960	0.76	-0.1
1,356,871	-		BPHYT_RS05960	0.83	-0.2
1,356,871	-		BPHYT_RS05960	0.83	-1.3
1,356,930	+				+0.6
1,356,931	-				+0.9
1,357,024	+				+0.3
1,357,284	-		BPHYT_RS05965	0.20	-2.8
1,357,284	-		BPHYT_RS05965	0.20	-0.9
1,357,299	+		BPHYT_RS05965	0.21	-0.1
1,357,300	-		BPHYT_RS05965	0.21	-1.2