Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05200

Experiment: 24hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO6 MOI 1
1,195,809	-				+0.0
1,195,835	+				-0.2
1,195,981	+				-2.7
1,196,056	+				+0.7
1,196,056	+				-1.2
1,196,057	-				+0.1
1,196,135	+				+1.4
1,196,274	-				-0.6
1,196,276	+				-1.3
1,196,276	+				-0.7
1,196,291	+				-0.3
1,196,294	+				-0.7
1,196,482	+		BPHYT_RS05195	0.68	+2.0
1,196,482	+		BPHYT_RS05195	0.68	+1.3
1,196,483	-		BPHYT_RS05195	0.69	-0.3
1,196,483	-		BPHYT_RS05195	0.69	+0.0
1,196,580	-				-0.1
1,196,581	+				+0.7
1,196,582	-				-1.1
1,196,779	-				-1.6
1,196,853	+				+0.8
1,196,853	+				+1.2
1,196,853	+				-0.3
1,196,854	-				-2.1
1,196,854	-				-0.2
1,196,905	-				-1.3
1,196,964	+		BPHYT_RS05200	0.14	-1.4
1,197,101	-		BPHYT_RS05200	0.25	+0.3
1,197,156	+		BPHYT_RS05200	0.29	+1.0
1,197,247	+		BPHYT_RS05200	0.36	-1.4
1,197,247	+		BPHYT_RS05200	0.36	-0.8
1,197,248	-		BPHYT_RS05200	0.36	-0.3
1,197,248	-		BPHYT_RS05200	0.36	+0.6
1,197,448	-		BPHYT_RS05200	0.51	-0.0
1,197,738	+		BPHYT_RS05200	0.73	+0.0
1,197,739	-		BPHYT_RS05200	0.74	-0.4
1,197,967	-				+0.8
1,197,972	+				-0.1
1,197,973	-				-0.3
1,197,973	-				-0.5
1,198,245	+				+1.4
1,198,246	-				-0.3
1,198,285	+				-0.2
1,198,679	+		BPHYT_RS05205	0.15	+0.0
1,198,822	+		BPHYT_RS05205	0.41	-1.0
1,198,822	+		BPHYT_RS05205	0.41	-0.3
1,198,822	+		BPHYT_RS05205	0.41	-0.1
1,198,822	+		BPHYT_RS05205	0.41	-0.8
1,198,891	-		BPHYT_RS05205	0.54	+0.3
1,198,935	+		BPHYT_RS05205	0.62	-0.5