Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05140

Experiment: 24hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO6 MOI 1
1,184,370	-				-0.7
1,184,749	+		BPHYT_RS05135	0.55	+1.1
1,184,749	+		BPHYT_RS05135	0.55	-0.0
1,184,920	+		BPHYT_RS05135	0.75	-0.2
1,184,978	-		BPHYT_RS05135	0.83	+0.1
1,185,076	-				-1.4
1,185,079	+				-1.0
1,185,079	+				-1.0
1,185,080	-				-2.1
1,185,080	-				-0.2
1,185,166	-				-1.2
1,185,280	-				+0.7
1,185,280	-				+0.3
1,185,628	+		BPHYT_RS05140	0.23	-1.9
1,186,099	-		BPHYT_RS05140	0.58	-0.9
1,186,103	+		BPHYT_RS05140	0.58	-0.9
1,186,183	-		BPHYT_RS05140	0.64	+0.3
1,186,350	-		BPHYT_RS05140	0.77	+0.3
1,186,451	-		BPHYT_RS05140	0.85	-1.2
1,186,453	-		BPHYT_RS05140	0.85	-0.3
1,186,879	+		BPHYT_RS05145	0.10	-0.6
1,186,879	+		BPHYT_RS05145	0.10	-0.4
1,186,879	+		BPHYT_RS05145	0.10	-2.4
1,186,880	-		BPHYT_RS05145	0.10	+1.0
1,187,050	+		BPHYT_RS05145	0.28	-0.9
1,187,154	-		BPHYT_RS05145	0.38	-0.6
1,187,156	-		BPHYT_RS05145	0.38	+1.3
1,187,185	+		BPHYT_RS05145	0.41	+0.7
1,187,185	+		BPHYT_RS05145	0.41	-0.4
1,187,507	-		BPHYT_RS05145	0.74	-0.4
1,187,511	-		BPHYT_RS05145	0.75	-0.2
1,187,530	+		BPHYT_RS05145	0.77	-0.0