Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04200 and BPHYT_RS04205 are separated by 174 nucleotides BPHYT_RS04205 and BPHYT_RS04210 are separated by 289 nucleotides BPHYT_RS04210 and BPHYT_RS04215 are separated by 255 nucleotides
BPHYT_RS04200: BPHYT_RS04200 - molecular chaperone GroEL, at 962,931 to 964,571
_RS04200
BPHYT_RS04205: BPHYT_RS04205 - kinase, at 964,746 to 965,606
_RS04205
BPHYT_RS04210: BPHYT_RS04210 - rubredoxin, at 965,896 to 966,066
_RS04210
BPHYT_RS04215: BPHYT_RS04215 - hypothetical protein, at 966,322 to 967,734
_RS04215
Position (kb) 964
965
966 Strain fitness (log2 ratio) -2
-1
0
1 at 964.744 kb on + strand at 964.838 kb on + strand, within BPHYT_RS04205 at 964.840 kb on + strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.888 kb on + strand, within BPHYT_RS04205 at 964.888 kb on + strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.964 kb on + strand, within BPHYT_RS04205 at 964.964 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.083 kb on + strand, within BPHYT_RS04205 at 965.663 kb on + strand at 965.663 kb on + strand at 965.664 kb on - strand at 965.805 kb on - strand at 965.879 kb on + strand at 966.228 kb on + strand at 966.228 kb on + strand at 966.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 964,744 + +0.9 964,838 + BPHYT_RS04205 0.11 -0.3 964,840 + BPHYT_RS04205 0.11 -0.0 964,841 - BPHYT_RS04205 0.11 -1.4 964,841 - BPHYT_RS04205 0.11 +0.4 964,841 - BPHYT_RS04205 0.11 +1.4 964,841 - BPHYT_RS04205 0.11 -2.0 964,888 + BPHYT_RS04205 0.16 -0.1 964,888 + BPHYT_RS04205 0.16 -1.7 964,889 - BPHYT_RS04205 0.17 +1.1 964,889 - BPHYT_RS04205 0.17 -0.8 964,889 - BPHYT_RS04205 0.17 -0.9 964,964 + BPHYT_RS04205 0.25 -0.3 964,964 + BPHYT_RS04205 0.25 -0.4 965,042 + BPHYT_RS04205 0.34 -2.6 965,042 + BPHYT_RS04205 0.34 -1.7 965,042 + BPHYT_RS04205 0.34 -0.9 965,083 + BPHYT_RS04205 0.39 -0.3 965,663 + -0.0 965,663 + -1.0 965,664 - +0.0 965,805 - -0.7 965,879 + +0.6 966,228 + -0.5 966,228 + +0.5 966,229 - -0.1
Or see this region's nucleotide sequence