Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04175 and BPHYT_RS04180 are separated by 432 nucleotides BPHYT_RS04180 and BPHYT_RS04185 are separated by 73 nucleotides
BPHYT_RS04175: BPHYT_RS04175 - hypothetical protein, at 957,402 to 958,118
_RS04175
BPHYT_RS04180: BPHYT_RS04180 - sugar ABC transporter substrate-binding protein, at 958,551 to 959,798
_RS04180
BPHYT_RS04185: BPHYT_RS04185 - diguanylate cyclase, at 959,872 to 961,116
_RS04185
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 957.601 kb on + strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.872 kb on - strand, within BPHYT_RS04175 at 957.917 kb on - strand, within BPHYT_RS04175 at 957.958 kb on - strand, within BPHYT_RS04175 at 958.096 kb on + strand at 958.096 kb on + strand at 958.202 kb on + strand at 958.367 kb on + strand at 958.368 kb on - strand at 958.389 kb on + strand at 958.447 kb on + strand at 958.492 kb on + strand at 958.552 kb on + strand at 958.638 kb on - strand at 958.730 kb on - strand, within BPHYT_RS04180 at 958.798 kb on + strand, within BPHYT_RS04180 at 958.799 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.934 kb on + strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180 at 959.407 kb on + strand, within BPHYT_RS04180 at 959.408 kb on - strand, within BPHYT_RS04180 at 959.518 kb on - strand, within BPHYT_RS04180 at 959.518 kb on - strand, within BPHYT_RS04180 at 959.646 kb on - strand, within BPHYT_RS04180 at 959.709 kb on + strand at 959.873 kb on + strand at 959.874 kb on - strand at 959.899 kb on - strand at 960.018 kb on - strand, within BPHYT_RS04185 at 960.018 kb on - strand, within BPHYT_RS04185 at 960.018 kb on - strand, within BPHYT_RS04185 at 960.018 kb on - strand, within BPHYT_RS04185 at 960.054 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.057 kb on - strand, within BPHYT_RS04185 at 960.057 kb on - strand, within BPHYT_RS04185 at 960.276 kb on + strand, within BPHYT_RS04185 at 960.277 kb on - strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.279 kb on - strand, within BPHYT_RS04185 at 960.380 kb on - strand, within BPHYT_RS04185 at 960.438 kb on - strand, within BPHYT_RS04185 at 960.470 kb on + strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.710 kb on + strand, within BPHYT_RS04185 at 960.710 kb on + strand, within BPHYT_RS04185 at 960.710 kb on + strand, within BPHYT_RS04185 at 960.711 kb on - strand, within BPHYT_RS04185 at 960.756 kb on - strand, within BPHYT_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 957,601 + BPHYT_RS04175 0.28 -0.2 957,669 - BPHYT_RS04175 0.37 +3.3 957,669 - BPHYT_RS04175 0.37 -0.3 957,697 + BPHYT_RS04175 0.41 -0.1 957,697 + BPHYT_RS04175 0.41 +0.1 957,872 - BPHYT_RS04175 0.66 +0.2 957,917 - BPHYT_RS04175 0.72 -0.0 957,958 - BPHYT_RS04175 0.78 +0.9 958,096 + -0.2 958,096 + +0.3 958,202 + +1.5 958,367 + +0.6 958,368 - -0.7 958,389 + -0.2 958,447 + +0.7 958,492 + -1.2 958,552 + -0.8 958,638 - +1.1 958,730 - BPHYT_RS04180 0.14 +0.1 958,798 + BPHYT_RS04180 0.20 -0.0 958,799 - BPHYT_RS04180 0.20 -0.6 958,916 - BPHYT_RS04180 0.29 -0.6 958,916 - BPHYT_RS04180 0.29 -0.6 958,934 + BPHYT_RS04180 0.31 +0.9 958,956 - BPHYT_RS04180 0.32 -0.2 958,956 - BPHYT_RS04180 0.32 -0.5 959,407 + BPHYT_RS04180 0.69 -0.0 959,408 - BPHYT_RS04180 0.69 -0.8 959,518 - BPHYT_RS04180 0.77 -3.3 959,518 - BPHYT_RS04180 0.77 +3.3 959,646 - BPHYT_RS04180 0.88 -2.4 959,709 + +0.2 959,873 + -0.0 959,874 - -1.4 959,899 - +0.3 960,018 - BPHYT_RS04185 0.12 -0.3 960,018 - BPHYT_RS04185 0.12 -0.4 960,018 - BPHYT_RS04185 0.12 +1.3 960,018 - BPHYT_RS04185 0.12 +1.1 960,054 + BPHYT_RS04185 0.15 -0.3 960,056 + BPHYT_RS04185 0.15 -1.1 960,056 + BPHYT_RS04185 0.15 -0.4 960,056 + BPHYT_RS04185 0.15 -0.9 960,056 + BPHYT_RS04185 0.15 -0.1 960,056 + BPHYT_RS04185 0.15 +0.9 960,056 + BPHYT_RS04185 0.15 +0.7 960,057 - BPHYT_RS04185 0.15 +0.5 960,057 - BPHYT_RS04185 0.15 +0.0 960,276 + BPHYT_RS04185 0.32 -0.9 960,277 - BPHYT_RS04185 0.33 +0.2 960,278 + BPHYT_RS04185 0.33 -0.8 960,278 + BPHYT_RS04185 0.33 -0.2 960,278 + BPHYT_RS04185 0.33 +0.8 960,278 + BPHYT_RS04185 0.33 +1.2 960,278 + BPHYT_RS04185 0.33 -0.8 960,279 - BPHYT_RS04185 0.33 -0.8 960,380 - BPHYT_RS04185 0.41 -1.0 960,438 - BPHYT_RS04185 0.45 +0.0 960,470 + BPHYT_RS04185 0.48 -0.2 960,703 - BPHYT_RS04185 0.67 -1.3 960,703 - BPHYT_RS04185 0.67 -0.6 960,703 - BPHYT_RS04185 0.67 +0.6 960,703 - BPHYT_RS04185 0.67 +0.3 960,710 + BPHYT_RS04185 0.67 +0.1 960,710 + BPHYT_RS04185 0.67 +0.8 960,710 + BPHYT_RS04185 0.67 -0.6 960,711 - BPHYT_RS04185 0.67 -0.2 960,756 - BPHYT_RS04185 0.71 -0.2
Or see this region's nucleotide sequence