Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03980 and BPHYT_RS03985 are separated by 53 nucleotides BPHYT_RS03985 and BPHYT_RS03990 are separated by 65 nucleotides
BPHYT_RS03980: BPHYT_RS03980 - mannose-1-phosphate guanyltransferase, at 904,729 to 906,276
_RS03980
BPHYT_RS03985: BPHYT_RS03985 - undecaprenyl-phosphate glucose phosphotransferase, at 906,330 to 907,715
_RS03985
BPHYT_RS03990: BPHYT_RS03990 - sugar ABC transporter substrate-binding protein, at 907,781 to 908,920
_RS03990
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.567 kb on - strand, within BPHYT_RS03980 at 906.259 kb on + strand at 906.259 kb on + strand at 906.504 kb on + strand, within BPHYT_RS03985 at 906.551 kb on - strand, within BPHYT_RS03985 at 906.780 kb on - strand, within BPHYT_RS03985 at 906.909 kb on + strand, within BPHYT_RS03985 at 906.909 kb on + strand, within BPHYT_RS03985 at 906.910 kb on - strand, within BPHYT_RS03985 at 906.911 kb on + strand, within BPHYT_RS03985 at 906.912 kb on - strand, within BPHYT_RS03985 at 906.912 kb on - strand, within BPHYT_RS03985 at 907.291 kb on - strand, within BPHYT_RS03985 at 907.292 kb on + strand, within BPHYT_RS03985 at 907.293 kb on - strand at 907.347 kb on - strand, within BPHYT_RS03985 at 907.515 kb on - strand, within BPHYT_RS03985 at 907.532 kb on - strand, within BPHYT_RS03985 at 908.211 kb on + strand, within BPHYT_RS03990 at 908.212 kb on - strand, within BPHYT_RS03990 at 908.255 kb on + strand, within BPHYT_RS03990 at 908.333 kb on - strand, within BPHYT_RS03990 at 908.582 kb on + strand, within BPHYT_RS03990 at 908.582 kb on + strand, within BPHYT_RS03990
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 905,386 + BPHYT_RS03980 0.42 +1.5 905,386 + BPHYT_RS03980 0.42 +0.3 905,387 - BPHYT_RS03980 0.43 -0.0 905,387 - BPHYT_RS03980 0.43 +0.4 905,512 + BPHYT_RS03980 0.51 +0.2 905,512 + BPHYT_RS03980 0.51 -1.9 905,567 - BPHYT_RS03980 0.54 -1.5 906,259 + -0.8 906,259 + -0.1 906,504 + BPHYT_RS03985 0.13 +0.5 906,551 - BPHYT_RS03985 0.16 -0.6 906,780 - BPHYT_RS03985 0.32 -0.6 906,909 + BPHYT_RS03985 0.42 -0.6 906,909 + BPHYT_RS03985 0.42 +0.1 906,910 - BPHYT_RS03985 0.42 -1.9 906,911 + BPHYT_RS03985 0.42 -0.7 906,912 - BPHYT_RS03985 0.42 -1.3 906,912 - BPHYT_RS03985 0.42 -0.5 907,291 - BPHYT_RS03985 0.69 -0.3 907,292 + BPHYT_RS03985 0.69 +2.8 907,293 - +1.3 907,347 - BPHYT_RS03985 0.73 +0.7 907,515 - BPHYT_RS03985 0.85 +3.3 907,532 - BPHYT_RS03985 0.87 -0.2 908,211 + BPHYT_RS03990 0.38 -0.1 908,212 - BPHYT_RS03990 0.38 +0.2 908,255 + BPHYT_RS03990 0.42 -1.3 908,333 - BPHYT_RS03990 0.48 -1.8 908,582 + BPHYT_RS03990 0.70 -1.0 908,582 + BPHYT_RS03990 0.70 -0.3
Or see this region's nucleotide sequence