Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03880 and BPHYT_RS03885 are separated by 243 nucleotides BPHYT_RS03885 and BPHYT_RS03890 are separated by 93 nucleotides
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
BPHYT_RS03885: BPHYT_RS03885 - 2-hydroxychromene-2-carboxylate isomerase, at 881,554 to 882,204
_RS03885
BPHYT_RS03890: BPHYT_RS03890 - C4-dicarboxylate ABC transporter substrate-binding protein, at 882,298 to 883,791
_RS03890
Position (kb) 881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.889 kb on + strand, within BPHYT_RS03880 at 880.989 kb on - strand, within BPHYT_RS03880 at 881.112 kb on - strand, within BPHYT_RS03880 at 881.283 kb on + strand at 881.419 kb on + strand at 881.506 kb on + strand at 881.507 kb on - strand at 881.530 kb on - strand at 881.549 kb on - strand at 881.555 kb on + strand at 881.642 kb on + strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.739 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 882.066 kb on - strand, within BPHYT_RS03885 at 882.145 kb on - strand at 882.204 kb on + strand at 882.204 kb on + strand at 882.205 kb on - strand at 882.248 kb on - strand at 882.261 kb on + strand at 882.303 kb on - strand at 882.657 kb on - strand, within BPHYT_RS03890 at 882.683 kb on + strand, within BPHYT_RS03890 at 882.684 kb on - strand, within BPHYT_RS03890 at 882.815 kb on + strand, within BPHYT_RS03890 at 883.082 kb on + strand, within BPHYT_RS03890 at 883.130 kb on + strand, within BPHYT_RS03890
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 880,730 + BPHYT_RS03880 0.41 +1.3 880,730 + BPHYT_RS03880 0.41 -0.7 880,730 + BPHYT_RS03880 0.41 -1.1 880,730 + BPHYT_RS03880 0.41 -1.1 880,889 + BPHYT_RS03880 0.57 +0.8 880,989 - BPHYT_RS03880 0.67 -0.9 881,112 - BPHYT_RS03880 0.80 -1.2 881,283 + +0.4 881,419 + +0.7 881,506 + -0.3 881,507 - -0.9 881,530 - +0.1 881,549 - -0.7 881,555 + +0.2 881,642 + BPHYT_RS03885 0.14 -0.8 881,643 - BPHYT_RS03885 0.14 -0.0 881,643 - BPHYT_RS03885 0.14 -1.0 881,739 + BPHYT_RS03885 0.28 -1.8 881,875 + BPHYT_RS03885 0.49 -0.3 881,875 + BPHYT_RS03885 0.49 +0.2 881,967 - BPHYT_RS03885 0.63 -3.7 881,967 - BPHYT_RS03885 0.63 -0.6 881,967 - BPHYT_RS03885 0.63 +1.3 881,967 - BPHYT_RS03885 0.63 -0.3 882,066 - BPHYT_RS03885 0.79 +1.6 882,145 - -0.3 882,204 + +0.3 882,204 + -1.2 882,205 - -0.2 882,248 - +1.0 882,261 + +0.0 882,303 - +0.6 882,657 - BPHYT_RS03890 0.24 -0.3 882,683 + BPHYT_RS03890 0.26 -1.7 882,684 - BPHYT_RS03890 0.26 +0.9 882,815 + BPHYT_RS03890 0.35 -0.5 883,082 + BPHYT_RS03890 0.52 -0.1 883,130 + BPHYT_RS03890 0.56 -1.0
Or see this region's nucleotide sequence