Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02510 and BPHYT_RS02515 are separated by 55 nucleotides BPHYT_RS02515 and BPHYT_RS02520 are separated by 20 nucleotides
BPHYT_RS02510: BPHYT_RS02510 - C4-dicarboxylate ABC transporter, at 569,117 to 570,397
_RS02510
BPHYT_RS02515: BPHYT_RS02515 - ATPase, at 570,453 to 572,453
_RS02515
BPHYT_RS02520: BPHYT_RS02520 - Fis family transcriptional regulator, at 572,474 to 573,823
_RS02520
Position (kb) 570
571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.474 kb on + strand, within BPHYT_RS02510 at 569.474 kb on + strand, within BPHYT_RS02510 at 569.747 kb on + strand, within BPHYT_RS02510 at 569.747 kb on + strand, within BPHYT_RS02510 at 569.748 kb on - strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.880 kb on - strand, within BPHYT_RS02510 at 569.884 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.421 kb on + strand at 570.426 kb on + strand at 570.427 kb on - strand at 570.525 kb on + strand at 570.526 kb on - strand at 570.633 kb on + strand at 570.633 kb on + strand at 570.634 kb on - strand at 570.634 kb on - strand at 570.634 kb on - strand at 570.747 kb on + strand, within BPHYT_RS02515 at 570.747 kb on + strand, within BPHYT_RS02515 at 570.747 kb on + strand, within BPHYT_RS02515 at 570.748 kb on - strand, within BPHYT_RS02515 at 570.748 kb on - strand, within BPHYT_RS02515 at 570.825 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.942 kb on + strand, within BPHYT_RS02515 at 570.958 kb on - strand, within BPHYT_RS02515 at 571.029 kb on + strand, within BPHYT_RS02515 at 571.029 kb on + strand, within BPHYT_RS02515 at 571.032 kb on + strand, within BPHYT_RS02515 at 571.033 kb on - strand, within BPHYT_RS02515 at 571.188 kb on + strand, within BPHYT_RS02515 at 571.188 kb on + strand, within BPHYT_RS02515 at 571.189 kb on - strand, within BPHYT_RS02515 at 571.350 kb on + strand, within BPHYT_RS02515 at 571.465 kb on - strand, within BPHYT_RS02515 at 571.465 kb on - strand, within BPHYT_RS02515 at 571.492 kb on - strand, within BPHYT_RS02515 at 571.697 kb on + strand, within BPHYT_RS02515 at 571.963 kb on + strand, within BPHYT_RS02515 at 572.381 kb on - strand at 572.381 kb on - strand at 572.381 kb on - strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.500 kb on + strand at 572.734 kb on + strand, within BPHYT_RS02520 at 572.734 kb on + strand, within BPHYT_RS02520 at 573.143 kb on - strand, within BPHYT_RS02520 at 573.246 kb on + strand, within BPHYT_RS02520 at 573.341 kb on - strand, within BPHYT_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 569,474 + BPHYT_RS02510 0.28 -1.0 569,474 + BPHYT_RS02510 0.28 +0.3 569,747 + BPHYT_RS02510 0.49 -0.6 569,747 + BPHYT_RS02510 0.49 -0.2 569,748 - BPHYT_RS02510 0.49 +0.1 569,879 + BPHYT_RS02510 0.59 -0.6 569,879 + BPHYT_RS02510 0.59 +0.1 569,879 + BPHYT_RS02510 0.59 -0.8 569,880 - BPHYT_RS02510 0.60 +0.6 569,884 + BPHYT_RS02510 0.60 +0.4 570,038 + BPHYT_RS02510 0.72 +1.4 570,038 + BPHYT_RS02510 0.72 +0.8 570,038 + BPHYT_RS02510 0.72 +0.2 570,038 + BPHYT_RS02510 0.72 -1.0 570,038 + BPHYT_RS02510 0.72 -0.3 570,039 - BPHYT_RS02510 0.72 -1.9 570,039 - BPHYT_RS02510 0.72 +0.2 570,039 - BPHYT_RS02510 0.72 -1.2 570,039 - BPHYT_RS02510 0.72 -0.1 570,421 + +0.8 570,426 + -0.5 570,427 - +0.8 570,525 + +1.1 570,526 - +0.2 570,633 + -1.0 570,633 + -1.3 570,634 - -0.9 570,634 - +0.3 570,634 - +0.4 570,747 + BPHYT_RS02515 0.15 +0.5 570,747 + BPHYT_RS02515 0.15 +0.0 570,747 + BPHYT_RS02515 0.15 -0.4 570,748 - BPHYT_RS02515 0.15 +1.0 570,748 - BPHYT_RS02515 0.15 +0.9 570,825 + BPHYT_RS02515 0.19 -2.0 570,867 + BPHYT_RS02515 0.21 +0.7 570,867 + BPHYT_RS02515 0.21 -0.3 570,867 + BPHYT_RS02515 0.21 +0.6 570,867 + BPHYT_RS02515 0.21 +0.1 570,867 + BPHYT_RS02515 0.21 +0.5 570,868 - BPHYT_RS02515 0.21 -0.2 570,868 - BPHYT_RS02515 0.21 +0.4 570,868 - BPHYT_RS02515 0.21 +0.6 570,942 + BPHYT_RS02515 0.24 +1.2 570,958 - BPHYT_RS02515 0.25 -0.2 571,029 + BPHYT_RS02515 0.29 -1.7 571,029 + BPHYT_RS02515 0.29 -0.0 571,032 + BPHYT_RS02515 0.29 -0.3 571,033 - BPHYT_RS02515 0.29 -0.4 571,188 + BPHYT_RS02515 0.37 +0.3 571,188 + BPHYT_RS02515 0.37 -0.4 571,189 - BPHYT_RS02515 0.37 -1.7 571,350 + BPHYT_RS02515 0.45 +0.5 571,465 - BPHYT_RS02515 0.51 +0.6 571,465 - BPHYT_RS02515 0.51 -0.9 571,492 - BPHYT_RS02515 0.52 +1.8 571,697 + BPHYT_RS02515 0.62 -1.0 571,963 + BPHYT_RS02515 0.75 +0.8 572,381 - +0.4 572,381 - -1.4 572,381 - -0.4 572,498 + +2.4 572,498 + +0.4 572,498 + +0.9 572,498 + -0.6 572,498 + +0.0 572,498 + -0.1 572,499 - -0.7 572,499 - -1.7 572,499 - +0.2 572,499 - -0.3 572,499 - +1.6 572,500 + -1.3 572,734 + BPHYT_RS02520 0.19 +0.4 572,734 + BPHYT_RS02520 0.19 +0.5 573,143 - BPHYT_RS02520 0.50 +1.7 573,246 + BPHYT_RS02520 0.57 +0.3 573,341 - BPHYT_RS02520 0.64 -0.5
Or see this region's nucleotide sequence