Experiment: 24hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02240 and BPHYT_RS02245 are separated by 85 nucleotides BPHYT_RS02245 and BPHYT_RS02250 are separated by 187 nucleotides
BPHYT_RS02240: BPHYT_RS02240 - isocitrate dehydrogenase kinase/phosphatase, at 514,158 to 515,996
_RS02240
BPHYT_RS02245: BPHYT_RS02245 - MerR family transcriptional regulator, at 516,082 to 516,486
_RS02245
BPHYT_RS02250: BPHYT_RS02250 - Zn-dependent hydrolase, at 516,674 to 517,747
_RS02250
Position (kb) 516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 515.109 kb on - strand, within BPHYT_RS02240 at 515.111 kb on - strand, within BPHYT_RS02240 at 515.338 kb on + strand, within BPHYT_RS02240 at 515.356 kb on + strand, within BPHYT_RS02240 at 515.548 kb on + strand, within BPHYT_RS02240 at 515.584 kb on + strand, within BPHYT_RS02240 at 515.584 kb on + strand, within BPHYT_RS02240 at 515.585 kb on - strand, within BPHYT_RS02240 at 515.719 kb on + strand, within BPHYT_RS02240 at 515.720 kb on - strand, within BPHYT_RS02240 at 515.816 kb on - strand at 515.823 kb on - strand at 516.042 kb on - strand at 516.263 kb on + strand, within BPHYT_RS02245 at 516.330 kb on + strand, within BPHYT_RS02245 at 516.357 kb on - strand, within BPHYT_RS02245 at 516.400 kb on + strand, within BPHYT_RS02245 at 516.473 kb on + strand at 516.473 kb on + strand at 516.591 kb on + strand at 517.215 kb on - strand, within BPHYT_RS02250 at 517.416 kb on + strand, within BPHYT_RS02250 at 517.468 kb on - strand, within BPHYT_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1 remove 515,109 - BPHYT_RS02240 0.52 -1.5 515,111 - BPHYT_RS02240 0.52 +0.3 515,338 + BPHYT_RS02240 0.64 +0.4 515,356 + BPHYT_RS02240 0.65 -0.5 515,548 + BPHYT_RS02240 0.76 -1.2 515,584 + BPHYT_RS02240 0.78 -0.1 515,584 + BPHYT_RS02240 0.78 -0.7 515,585 - BPHYT_RS02240 0.78 +0.1 515,719 + BPHYT_RS02240 0.85 -0.3 515,720 - BPHYT_RS02240 0.85 -0.2 515,816 - -1.1 515,823 - -1.4 516,042 - -1.5 516,263 + BPHYT_RS02245 0.45 -1.4 516,330 + BPHYT_RS02245 0.61 -2.8 516,357 - BPHYT_RS02245 0.68 -1.6 516,400 + BPHYT_RS02245 0.79 -1.7 516,473 + -1.8 516,473 + -1.0 516,591 + -1.0 517,215 - BPHYT_RS02250 0.50 -0.6 517,416 + BPHYT_RS02250 0.69 -0.0 517,468 - BPHYT_RS02250 0.74 -0.7
Or see this region's nucleotide sequence