Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01070

Experiment: 24hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01065 and BPHYT_RS01070 are separated by 48 nucleotides BPHYT_RS01065: BPHYT_RS01065 - GMC family oxidoreductase, at 243,160 to 244,938 _RS01065 BPHYT_RS01070: BPHYT_RS01070 - gluconate 2-dehydrogenase, at 244,987 to 245,706 _RS01070 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 244.058 kb on + strand, within BPHYT_RS01065at 244.058 kb on + strand, within BPHYT_RS01065at 244.058 kb on + strand, within BPHYT_RS01065at 244.059 kb on - strand, within BPHYT_RS01065at 244.059 kb on - strand, within BPHYT_RS01065at 244.253 kb on + strand, within BPHYT_RS01065at 244.514 kb on + strand, within BPHYT_RS01065at 244.514 kb on + strand, within BPHYT_RS01065at 244.670 kb on + strand, within BPHYT_RS01065at 244.764 kb on - strandat 244.810 kb on - strandat 245.324 kb on + strand, within BPHYT_RS01070at 245.325 kb on - strand, within BPHYT_RS01070at 245.325 kb on - strand, within BPHYT_RS01070at 245.342 kb on + strand, within BPHYT_RS01070at 245.343 kb on - strand, within BPHYT_RS01070at 245.420 kb on + strand, within BPHYT_RS01070at 245.791 kb on + strandat 245.888 kb on - strandat 246.006 kb on + strandat 246.007 kb on - strandat 246.121 kb on + strandat 246.221 kb on - strandat 246.487 kb on + strandat 246.496 kb on - strandat 246.496 kb on - strandat 246.622 kb on + strandat 246.623 kb on - strandat 246.623 kb on - strandat 246.623 kb on - strandat 246.625 kb on - strandat 246.679 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 1
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244,058 + BPHYT_RS01065 0.50 -2.7
244,058 + BPHYT_RS01065 0.50 +0.0
244,058 + BPHYT_RS01065 0.50 -0.4
244,059 - BPHYT_RS01065 0.51 -0.0
244,059 - BPHYT_RS01065 0.51 -1.3
244,253 + BPHYT_RS01065 0.61 +4.8
244,514 + BPHYT_RS01065 0.76 +0.0
244,514 + BPHYT_RS01065 0.76 -0.3
244,670 + BPHYT_RS01065 0.85 +1.4
244,764 - -0.4
244,810 - +0.2
245,324 + BPHYT_RS01070 0.47 +0.2
245,325 - BPHYT_RS01070 0.47 -0.4
245,325 - BPHYT_RS01070 0.47 -1.3
245,342 + BPHYT_RS01070 0.49 +2.0
245,343 - BPHYT_RS01070 0.49 +0.7
245,420 + BPHYT_RS01070 0.60 -0.2
245,791 + -0.1
245,888 - +0.6
246,006 + -0.5
246,007 - +2.4
246,121 + +0.9
246,221 - +1.1
246,487 + +0.6
246,496 - -0.4
246,496 - -0.2
246,622 + -0.6
246,623 - -1.3
246,623 - -0.3
246,623 - +0.6
246,625 - -0.1
246,679 + -1.4

Or see this region's nucleotide sequence