Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00185

Experiment: 24hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO6 MOI 1
48,001	+		BPHYT_RS00180	0.77	-0.3
48,001	+		BPHYT_RS00180	0.77	-0.3
48,001	+		BPHYT_RS00180	0.77	-0.3
48,001	+		BPHYT_RS00180	0.77	-1.3
48,001	+		BPHYT_RS00180	0.77	-0.2
48,001	+		BPHYT_RS00180	0.77	+1.0
48,002	-		BPHYT_RS00180	0.77	-0.0
48,002	-		BPHYT_RS00180	0.77	-1.0
48,002	-		BPHYT_RS00180	0.77	+0.2
48,003	+		BPHYT_RS00180	0.77	-0.2
48,003	+		BPHYT_RS00180	0.77	+0.4
48,003	+		BPHYT_RS00180	0.77	+0.3
48,003	+		BPHYT_RS00180	0.77	-0.2
48,003	+		BPHYT_RS00180	0.77	+0.6
48,003	+		BPHYT_RS00180	0.77	-0.7
48,003	+		BPHYT_RS00180	0.77	+0.8
48,004	-		BPHYT_RS00180	0.77	+1.1
48,004	-		BPHYT_RS00180	0.77	-0.3
48,004	-		BPHYT_RS00180	0.77	+0.8
48,004	-		BPHYT_RS00180	0.77	+0.4
48,004	-		BPHYT_RS00180	0.77	-0.1
48,106	+				+0.2
48,181	+				-0.1
48,181	+				-1.3
48,181	+				-0.8
48,181	+				-0.5
48,399	-				-2.4
48,422	-				-0.2
48,422	-				-0.5
48,453	+				+0.8
48,485	+				-0.5
48,485	+				+1.3
48,485	+				+0.4
48,486	-				-2.1
48,539	+				-0.9
48,605	-				+0.2
48,702	+				-0.7
48,738	+				-1.7
48,738	+				+1.1
48,739	-				-1.4
48,838	-				-0.7
48,921	-				-0.3
49,009	+				-1.8
49,010	-				+0.3
49,010	-				+0.9
49,010	-				-0.4
49,170	-		BPHYT_RS00185	0.22	+0.4
49,281	+		BPHYT_RS00185	0.32	-0.2
49,282	-		BPHYT_RS00185	0.32	-1.1
49,410	+		BPHYT_RS00185	0.43	+1.7
49,410	+		BPHYT_RS00185	0.43	+0.4
49,410	+		BPHYT_RS00185	0.43	+0.3
49,410	+		BPHYT_RS00185	0.43	+0.6
49,411	-		BPHYT_RS00185	0.43	+1.8
49,411	-		BPHYT_RS00185	0.43	+1.1
49,629	+		BPHYT_RS00185	0.62	-0.0
49,629	+		BPHYT_RS00185	0.62	-0.5
49,629	+		BPHYT_RS00185	0.62	-0.2
49,630	-		BPHYT_RS00185	0.63	+0.3
49,630	-		BPHYT_RS00185	0.63	+0.1
49,792	+		BPHYT_RS00185	0.77	-0.5
49,792	+		BPHYT_RS00185	0.77	+0.6
49,792	+		BPHYT_RS00185	0.77	+0.2
49,793	-		BPHYT_RS00185	0.77	-1.8
49,794	+		BPHYT_RS00185	0.77	-0.2
49,794	+		BPHYT_RS00185	0.77	-0.7
49,795	-		BPHYT_RS00185	0.77	+2.7
49,795	-		BPHYT_RS00185	0.77	-1.5
49,795	-		BPHYT_RS00185	0.77	-0.2
49,919	+		BPHYT_RS00185	0.88	+0.8
50,096	-				-0.7
50,223	-				+0.4
50,378	+		BPHYT_RS00190	0.22	+0.3
50,379	-		BPHYT_RS00190	0.22	-3.2
50,475	-		BPHYT_RS00190	0.31	-1.5
50,483	+		BPHYT_RS00190	0.32	-0.6
50,484	-		BPHYT_RS00190	0.32	-0.7
50,543	+		BPHYT_RS00190	0.37	-0.7
50,666	+		BPHYT_RS00190	0.49	-0.6
50,667	-		BPHYT_RS00190	0.49	-0.6
50,788	-		BPHYT_RS00190	0.60	-1.8
50,825	+		BPHYT_RS00190	0.64	-0.7
50,826	-		BPHYT_RS00190	0.64	+0.4
50,826	-		BPHYT_RS00190	0.64	+0.3
50,826	-				-0.8
50,826	-		BPHYT_RS00190	0.64	+0.7
50,826	-		BPHYT_RS00190	0.64	-1.5
50,931	-		BPHYT_RS00190	0.74	-0.4
50,931	-		BPHYT_RS00190	0.74	-0.7
51,051	-		BPHYT_RS00190	0.85	-0.1