Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28155

Experiment: 24hr PHYTO6 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28150 and BPHYT_RS28155 are separated by 8 nucleotidesBPHYT_RS28155 and BPHYT_RS28160 are separated by 75 nucleotides BPHYT_RS28150: BPHYT_RS28150 - methylmalonate-semialdehyde dehydrogenase, at 1,873,333 to 1,874,850 _RS28150 BPHYT_RS28155: BPHYT_RS28155 - hypothetical protein, at 1,874,859 to 1,875,125 _RS28155 BPHYT_RS28160: BPHYT_RS28160 - MFS transporter, at 1,875,201 to 1,876,445 _RS28160 Position (kb) 1874 1875 1876Strain fitness (log2 ratio) -2 -1 0 1at 1874.007 kb on - strand, within BPHYT_RS28150at 1874.133 kb on - strand, within BPHYT_RS28150at 1874.565 kb on + strand, within BPHYT_RS28150at 1874.758 kb on + strandat 1874.759 kb on - strandat 1874.955 kb on - strand, within BPHYT_RS28155at 1874.967 kb on - strand, within BPHYT_RS28155at 1875.097 kb on + strand, within BPHYT_RS28155at 1875.933 kb on - strand, within BPHYT_RS28160at 1875.964 kb on - strand, within BPHYT_RS28160

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 10
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1,874,007 - BPHYT_RS28150 0.44 -0.4
1,874,133 - BPHYT_RS28150 0.53 +0.6
1,874,565 + BPHYT_RS28150 0.81 -2.1
1,874,758 + +1.3
1,874,759 - -0.7
1,874,955 - BPHYT_RS28155 0.36 -1.2
1,874,967 - BPHYT_RS28155 0.40 -1.5
1,875,097 + BPHYT_RS28155 0.89 -1.8
1,875,933 - BPHYT_RS28160 0.59 -0.9
1,875,964 - BPHYT_RS28160 0.61 +0.8

Or see this region's nucleotide sequence