Experiment: 24hr PHYTO6 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26155 and BPHYT_RS26160 are separated by 38 nucleotides BPHYT_RS26160 and BPHYT_RS26165 are separated by 56 nucleotides BPHYT_RS26165 and BPHYT_RS26170 are separated by 206 nucleotides BPHYT_RS26170 and BPHYT_RS26175 are separated by 80 nucleotides
BPHYT_RS26155: BPHYT_RS26155 - carboxylesterase, at 1,443,042 to 1,443,911
_RS26155
BPHYT_RS26160: BPHYT_RS26160 - membrane protein, at 1,443,950 to 1,444,756
_RS26160
BPHYT_RS26165: BPHYT_RS26165 - hypothetical protein, at 1,444,813 to 1,445,517
_RS26165
BPHYT_RS26170: BPHYT_RS26170 - lipocalin, at 1,445,724 to 1,446,296
_RS26170
BPHYT_RS26175: BPHYT_RS26175 - XRE family transcriptional regulator, at 1,446,377 to 1,446,949
_RS26175
Position (kb) 1444
1445
1446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1444.142 kb on + strand, within BPHYT_RS26160 at 1444.511 kb on + strand, within BPHYT_RS26160 at 1444.603 kb on + strand, within BPHYT_RS26160 at 1444.604 kb on - strand, within BPHYT_RS26160 at 1444.754 kb on + strand at 1445.566 kb on - strand at 1445.690 kb on - strand at 1445.892 kb on + strand, within BPHYT_RS26170 at 1445.892 kb on + strand, within BPHYT_RS26170 at 1446.000 kb on - strand, within BPHYT_RS26170 at 1446.141 kb on + strand, within BPHYT_RS26170 at 1446.141 kb on + strand, within BPHYT_RS26170 at 1446.141 kb on + strand, within BPHYT_RS26170 at 1446.144 kb on - strand, within BPHYT_RS26170 at 1446.181 kb on + strand, within BPHYT_RS26170 at 1446.182 kb on - strand, within BPHYT_RS26170
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 10 remove 1,444,142 + BPHYT_RS26160 0.24 -0.4 1,444,511 + BPHYT_RS26160 0.70 -1.2 1,444,603 + BPHYT_RS26160 0.81 -1.6 1,444,604 - BPHYT_RS26160 0.81 -0.2 1,444,754 + +0.0 1,445,566 - +0.7 1,445,690 - -2.8 1,445,892 + BPHYT_RS26170 0.29 +0.2 1,445,892 + BPHYT_RS26170 0.29 +3.6 1,446,000 - BPHYT_RS26170 0.48 -1.0 1,446,141 + BPHYT_RS26170 0.73 +0.3 1,446,141 + BPHYT_RS26170 0.73 -0.3 1,446,141 + BPHYT_RS26170 0.73 +0.6 1,446,144 - BPHYT_RS26170 0.73 -0.3 1,446,181 + BPHYT_RS26170 0.80 -1.5 1,446,182 - BPHYT_RS26170 0.80 +0.7
Or see this region's nucleotide sequence