Experiment: 24hr PHYTO6 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26035 and BPHYT_RS26040 are separated by 2 nucleotides BPHYT_RS26040 and BPHYT_RS26045 are separated by 61 nucleotides BPHYT_RS26045 and BPHYT_RS26050 are separated by 1 nucleotides
BPHYT_RS26035: BPHYT_RS26035 - ABC transporter ATP-binding protein, at 1,415,807 to 1,417,417
_RS26035
BPHYT_RS26040: BPHYT_RS26040 - cysteine hydrolase, at 1,417,420 to 1,418,112
_RS26040
BPHYT_RS26045: BPHYT_RS26045 - ABC transporter permease, at 1,418,174 to 1,419,091
_RS26045
BPHYT_RS26050: BPHYT_RS26050 - ABC transporter permease, at 1,419,093 to 1,420,208
_RS26050
Position (kb) 1417
1418
1419 Strain fitness (log2 ratio) -1
0
1 at 1416.918 kb on - strand, within BPHYT_RS26035 at 1416.939 kb on + strand, within BPHYT_RS26035 at 1416.940 kb on - strand, within BPHYT_RS26035 at 1417.417 kb on + strand at 1417.418 kb on - strand at 1417.489 kb on - strand at 1417.995 kb on - strand, within BPHYT_RS26040 at 1418.118 kb on - strand at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.284 kb on - strand, within BPHYT_RS26045 at 1419.092 kb on - strand at 1419.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 10 remove 1,416,918 - BPHYT_RS26035 0.69 +0.6 1,416,939 + BPHYT_RS26035 0.70 +0.7 1,416,940 - BPHYT_RS26035 0.70 -0.3 1,417,417 + -0.3 1,417,418 - +0.3 1,417,489 - -1.6 1,417,995 - BPHYT_RS26040 0.83 +0.5 1,418,118 - -1.0 1,418,278 - BPHYT_RS26045 0.11 +0.8 1,418,278 - BPHYT_RS26045 0.11 +0.3 1,418,284 - BPHYT_RS26045 0.12 -0.1 1,419,092 - +0.1 1,419,092 - -0.5
Or see this region's nucleotide sequence