Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24815

Experiment: 24hr PHYTO6 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24805 and BPHYT_RS24810 are separated by 32 nucleotidesBPHYT_RS24810 and BPHYT_RS24815 are separated by 12 nucleotidesBPHYT_RS24815 and BPHYT_RS24820 overlap by 17 nucleotides BPHYT_RS24805: BPHYT_RS24805 - sensor histidine kinase, at 1,132,611 to 1,135,100 _RS24805 BPHYT_RS24810: BPHYT_RS24810 - hypothetical protein, at 1,135,133 to 1,135,741 _RS24810 BPHYT_RS24815: BPHYT_RS24815 - cob(II)yrinic acid a,c-diamide reductase, at 1,135,754 to 1,136,413 _RS24815 BPHYT_RS24820: BPHYT_RS24820 - cobyrinic acid a,c-diamide synthase, at 1,136,397 to 1,137,695 _RS24820 Position (kb) 1135 1136 1137Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1134.760 kb on - strand, within BPHYT_RS24805at 1134.760 kb on - strand, within BPHYT_RS24805at 1135.104 kb on - strandat 1135.213 kb on + strand, within BPHYT_RS24810at 1135.262 kb on + strand, within BPHYT_RS24810at 1135.264 kb on + strand, within BPHYT_RS24810at 1135.264 kb on + strand, within BPHYT_RS24810at 1135.265 kb on - strand, within BPHYT_RS24810at 1135.382 kb on + strand, within BPHYT_RS24810at 1135.559 kb on + strand, within BPHYT_RS24810at 1136.452 kb on + strandat 1136.452 kb on + strandat 1136.464 kb on + strandat 1136.723 kb on - strand, within BPHYT_RS24820at 1136.723 kb on - strand, within BPHYT_RS24820at 1136.919 kb on + strand, within BPHYT_RS24820at 1137.075 kb on + strand, within BPHYT_RS24820at 1137.075 kb on + strand, within BPHYT_RS24820

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 10
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1,134,760 - BPHYT_RS24805 0.86 -1.4
1,134,760 - BPHYT_RS24805 0.86 -0.2
1,135,104 - +2.8
1,135,213 + BPHYT_RS24810 0.13 -0.5
1,135,262 + BPHYT_RS24810 0.21 +1.1
1,135,264 + BPHYT_RS24810 0.22 +0.2
1,135,264 + BPHYT_RS24810 0.22 +1.2
1,135,265 - BPHYT_RS24810 0.22 +0.2
1,135,382 + BPHYT_RS24810 0.41 +0.6
1,135,559 + BPHYT_RS24810 0.70 -1.3
1,136,452 + -0.6
1,136,452 + -0.8
1,136,464 + +0.8
1,136,723 - BPHYT_RS24820 0.25 -0.4
1,136,723 - BPHYT_RS24820 0.25 +0.2
1,136,919 + BPHYT_RS24820 0.40 -1.8
1,137,075 + BPHYT_RS24820 0.52 +0.8
1,137,075 + BPHYT_RS24820 0.52 +0.3

Or see this region's nucleotide sequence