Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23210

Experiment: 24hr PHYTO6 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23200 and BPHYT_RS23205 are separated by 183 nucleotidesBPHYT_RS23205 and BPHYT_RS23210 are separated by 78 nucleotidesBPHYT_RS23210 and BPHYT_RS23215 are separated by 107 nucleotides BPHYT_RS23200: BPHYT_RS23200 - cupin, at 770,833 to 771,249 _RS23200 BPHYT_RS23205: BPHYT_RS23205 - alkylhydroperoxidase, at 771,433 to 772,038 _RS23205 BPHYT_RS23210: BPHYT_RS23210 - MFS transporter, at 772,117 to 773,367 _RS23210 BPHYT_RS23215: BPHYT_RS23215 - transcriptional regulator, at 773,475 to 774,413 _RS23215 Position (kb) 772 773 774Strain fitness (log2 ratio) -2 -1 0 1at 771.322 kb on + strandat 771.391 kb on - strandat 771.404 kb on + strandat 771.405 kb on - strandat 771.691 kb on + strand, within BPHYT_RS23205at 771.988 kb on + strandat 772.503 kb on - strand, within BPHYT_RS23210at 772.876 kb on + strand, within BPHYT_RS23210at 774.199 kb on + strand, within BPHYT_RS23215at 774.199 kb on + strand, within BPHYT_RS23215at 774.199 kb on + strand, within BPHYT_RS23215at 774.209 kb on - strand, within BPHYT_RS23215

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 10
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771,322 + -0.5
771,391 - -0.0
771,404 + -0.1
771,405 - -0.5
771,691 + BPHYT_RS23205 0.43 -2.4
771,988 + -0.1
772,503 - BPHYT_RS23210 0.31 -1.3
772,876 + BPHYT_RS23210 0.61 -0.0
774,199 + BPHYT_RS23215 0.77 +0.2
774,199 + BPHYT_RS23215 0.77 +0.7
774,199 + BPHYT_RS23215 0.77 +0.2
774,209 - BPHYT_RS23215 0.78 -1.4

Or see this region's nucleotide sequence