Experiment: 24hr PHYTO6 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00070 and BPHYT_RS00075 overlap by 4 nucleotides BPHYT_RS00075 and BPHYT_RS00080 overlap by 8 nucleotides BPHYT_RS00080 and BPHYT_RS00085 are separated by 2 nucleotides
BPHYT_RS00070: BPHYT_RS00070 - hypothetical protein, at 19,944 to 21,122
_RS00070
BPHYT_RS00075: BPHYT_RS00075 - hypothetical protein, at 21,119 to 24,493
_RS00075
BPHYT_RS00080: BPHYT_RS00080 - hypothetical protein, at 24,486 to 25,133
_RS00080
BPHYT_RS00085: BPHYT_RS00085 - hypothetical protein, at 25,136 to 26,590
_RS00085
Position (kb) 21
22
23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 20.355 kb on - strand, within BPHYT_RS00070 at 20.475 kb on - strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.594 kb on - strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.642 kb on + strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.876 kb on + strand, within BPHYT_RS00070 at 20.876 kb on + strand, within BPHYT_RS00070 at 21.041 kb on + strand at 21.042 kb on - strand at 21.222 kb on - strand at 21.240 kb on + strand at 21.240 kb on + strand at 21.241 kb on - strand at 21.241 kb on - strand at 21.378 kb on - strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.433 kb on - strand at 21.480 kb on + strand, within BPHYT_RS00075 at 21.758 kb on - strand, within BPHYT_RS00075 at 21.759 kb on + strand, within BPHYT_RS00075 at 21.760 kb on - strand, within BPHYT_RS00075 at 21.774 kb on + strand, within BPHYT_RS00075 at 21.822 kb on - strand, within BPHYT_RS00075 at 21.898 kb on + strand, within BPHYT_RS00075 at 22.195 kb on - strand, within BPHYT_RS00075 at 22.195 kb on - strand, within BPHYT_RS00075 at 22.246 kb on + strand, within BPHYT_RS00075 at 22.247 kb on - strand, within BPHYT_RS00075 at 22.534 kb on + strand, within BPHYT_RS00075 at 22.612 kb on + strand, within BPHYT_RS00075 at 22.613 kb on - strand, within BPHYT_RS00075 at 22.632 kb on + strand, within BPHYT_RS00075 at 22.632 kb on + strand, within BPHYT_RS00075 at 22.800 kb on + strand, within BPHYT_RS00075 at 22.801 kb on - strand, within BPHYT_RS00075 at 22.801 kb on - strand, within BPHYT_RS00075 at 22.897 kb on - strand, within BPHYT_RS00075 at 23.063 kb on + strand, within BPHYT_RS00075 at 23.063 kb on + strand, within BPHYT_RS00075 at 23.063 kb on + strand, within BPHYT_RS00075 at 23.064 kb on - strand, within BPHYT_RS00075 at 23.064 kb on - strand, within BPHYT_RS00075 at 23.064 kb on - strand, within BPHYT_RS00075 at 23.631 kb on - strand, within BPHYT_RS00075 at 23.631 kb on - strand, within BPHYT_RS00075 at 23.841 kb on - strand, within BPHYT_RS00075 at 23.910 kb on + strand, within BPHYT_RS00075 at 24.138 kb on + strand, within BPHYT_RS00075 at 24.138 kb on + strand, within BPHYT_RS00075 at 24.139 kb on - strand, within BPHYT_RS00075 at 24.266 kb on - strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.268 kb on - strand at 24.409 kb on + strand at 24.485 kb on - strand at 24.533 kb on - strand at 24.779 kb on + strand, within BPHYT_RS00080 at 24.779 kb on + strand, within BPHYT_RS00080 at 24.963 kb on + strand, within BPHYT_RS00080 at 24.988 kb on + strand, within BPHYT_RS00080 at 25.051 kb on + strand, within BPHYT_RS00080 at 25.137 kb on + strand at 25.138 kb on - strand at 25.247 kb on - strand at 25.255 kb on + strand at 25.304 kb on + strand, within BPHYT_RS00085 at 25.360 kb on + strand, within BPHYT_RS00085 at 25.448 kb on + strand, within BPHYT_RS00085 at 25.449 kb on - strand, within BPHYT_RS00085 at 25.488 kb on + strand, within BPHYT_RS00085
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 10 remove 20,355 - BPHYT_RS00070 0.35 +0.5 20,475 - BPHYT_RS00070 0.45 +0.3 20,478 + BPHYT_RS00070 0.45 +0.3 20,478 + BPHYT_RS00070 0.45 +1.9 20,478 + BPHYT_RS00070 0.45 +0.2 20,478 + BPHYT_RS00070 0.45 +0.5 20,594 - BPHYT_RS00070 0.55 -0.4 20,640 + BPHYT_RS00070 0.59 +0.4 20,640 + BPHYT_RS00070 0.59 +0.6 20,640 + BPHYT_RS00070 0.59 -0.5 20,641 - BPHYT_RS00070 0.59 +1.0 20,641 - BPHYT_RS00070 0.59 +0.3 20,642 + BPHYT_RS00070 0.59 -1.1 20,643 - BPHYT_RS00070 0.59 +0.0 20,643 - BPHYT_RS00070 0.59 -0.5 20,644 + BPHYT_RS00070 0.59 -0.4 20,644 + BPHYT_RS00070 0.59 -0.5 20,645 - BPHYT_RS00070 0.59 -1.4 20,645 - BPHYT_RS00070 0.59 -1.6 20,682 + BPHYT_RS00070 0.63 -0.5 20,682 + BPHYT_RS00070 0.63 +0.2 20,683 - BPHYT_RS00070 0.63 +0.2 20,683 - BPHYT_RS00070 0.63 +0.5 20,683 - BPHYT_RS00070 0.63 +1.3 20,683 - BPHYT_RS00070 0.63 -0.0 20,683 - BPHYT_RS00070 0.63 +0.1 20,683 - BPHYT_RS00070 0.63 +0.4 20,683 - BPHYT_RS00070 0.63 +0.5 20,876 + BPHYT_RS00070 0.79 +0.3 20,876 + BPHYT_RS00070 0.79 +0.1 21,041 + +0.8 21,042 - +0.3 21,222 - +0.7 21,240 + +0.1 21,240 + -0.7 21,241 - +0.4 21,241 - -0.5 21,378 - -0.8 21,430 + +0.2 21,430 + -0.3 21,430 + -1.4 21,431 - -0.9 21,431 - -0.2 21,431 - +0.3 21,433 - -1.1 21,480 + BPHYT_RS00075 0.11 +0.3 21,758 - BPHYT_RS00075 0.19 +0.9 21,759 + BPHYT_RS00075 0.19 -1.1 21,760 - BPHYT_RS00075 0.19 +0.1 21,774 + BPHYT_RS00075 0.19 +2.3 21,822 - BPHYT_RS00075 0.21 -1.2 21,898 + BPHYT_RS00075 0.23 -0.3 22,195 - BPHYT_RS00075 0.32 -0.2 22,195 - BPHYT_RS00075 0.32 +0.1 22,246 + BPHYT_RS00075 0.33 -0.3 22,247 - BPHYT_RS00075 0.33 +0.2 22,534 + BPHYT_RS00075 0.42 +0.8 22,612 + BPHYT_RS00075 0.44 -1.4 22,613 - BPHYT_RS00075 0.44 -1.2 22,632 + BPHYT_RS00075 0.45 +0.4 22,632 + BPHYT_RS00075 0.45 +1.6 22,800 + BPHYT_RS00075 0.50 -1.4 22,801 - BPHYT_RS00075 0.50 -0.7 22,801 - BPHYT_RS00075 0.50 +0.4 22,897 - BPHYT_RS00075 0.53 -1.1 23,063 + BPHYT_RS00075 0.58 -1.2 23,063 + BPHYT_RS00075 0.58 +2.3 23,063 + BPHYT_RS00075 0.58 -0.6 23,064 - BPHYT_RS00075 0.58 -0.7 23,064 - BPHYT_RS00075 0.58 -1.8 23,064 - BPHYT_RS00075 0.58 -0.5 23,631 - BPHYT_RS00075 0.74 +0.4 23,631 - BPHYT_RS00075 0.74 +0.7 23,841 - BPHYT_RS00075 0.81 +0.4 23,910 + BPHYT_RS00075 0.83 -0.5 24,138 + BPHYT_RS00075 0.89 -0.9 24,138 + BPHYT_RS00075 0.89 -0.7 24,139 - BPHYT_RS00075 0.89 +0.5 24,266 - +0.5 24,267 + -0.5 24,267 + -0.1 24,267 + -0.3 24,267 + -0.1 24,267 + -0.0 24,268 - +0.9 24,409 + -0.1 24,485 - +1.7 24,533 - -0.5 24,779 + BPHYT_RS00080 0.45 -0.5 24,779 + BPHYT_RS00080 0.45 -1.3 24,963 + BPHYT_RS00080 0.74 -0.8 24,988 + BPHYT_RS00080 0.77 -1.4 25,051 + BPHYT_RS00080 0.87 +0.6 25,137 + +1.1 25,138 - +1.3 25,247 - +1.5 25,255 + -0.9 25,304 + BPHYT_RS00085 0.12 +0.6 25,360 + BPHYT_RS00085 0.15 -2.3 25,448 + BPHYT_RS00085 0.21 +2.5 25,449 - BPHYT_RS00085 0.22 +2.3 25,488 + BPHYT_RS00085 0.24 +0.1
Or see this region's nucleotide sequence