Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32665

Experiment: 24hr PHYTO10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO10 MOI 1
2,903,363	-				+2.0
2,903,427	+				-1.7
2,903,427	+				-0.4
2,903,428	-				+0.2
2,903,681	+				-0.5
2,904,322	-				+0.4
2,904,494	-		BPHYT_RS32665	0.20	+0.9
2,904,521	+		BPHYT_RS32665	0.22	-0.9
2,904,521	+		BPHYT_RS32665	0.22	-0.3
2,904,523	+		BPHYT_RS32665	0.22	-0.4
2,904,523	+		BPHYT_RS32665	0.22	-0.3
2,904,523	+		BPHYT_RS32665	0.22	+0.1
2,904,524	-		BPHYT_RS32665	0.22	+0.5
2,904,524	-		BPHYT_RS32665	0.22	-0.7
2,904,781	+		BPHYT_RS32665	0.41	+1.0
2,904,909	+		BPHYT_RS32665	0.50	+1.3
2,905,067	+		BPHYT_RS32665	0.62	+0.0
2,905,068	-		BPHYT_RS32665	0.62	+0.2
2,905,069	+		BPHYT_RS32665	0.62	-1.4
2,905,069	+		BPHYT_RS32665	0.62	+0.4
2,905,069	+		BPHYT_RS32665	0.62	-0.1
2,905,070	-		BPHYT_RS32665	0.62	+0.8
2,905,267	+		BPHYT_RS32665	0.76	-0.6
2,905,268	-		BPHYT_RS32665	0.76	+0.3
2,905,271	+		BPHYT_RS32665	0.76	-0.2
2,905,272	-		BPHYT_RS32665	0.77	-0.0
2,905,336	+		BPHYT_RS32665	0.81	+0.2
2,905,364	-		BPHYT_RS32665	0.83	+0.1
2,905,483	+				-0.2
2,905,483	+				-1.3
2,905,484	-				+0.9
2,905,484	-				-0.3
2,905,484	-				+0.6
2,905,659	+				+0.4
2,905,768	-				+0.0
2,905,768	-				+0.7
2,905,841	+				+0.0
2,905,884	+				-0.1
2,906,171	+		BPHYT_RS32670	0.41	+0.8
2,906,171	+		BPHYT_RS32670	0.41	-1.0
2,906,171	+		BPHYT_RS32670	0.41	-0.1
2,906,172	-		BPHYT_RS32670	0.41	-0.6
2,906,308	+		BPHYT_RS32670	0.58	-0.3
2,906,308	+		BPHYT_RS32670	0.58	-0.2
2,906,309	-		BPHYT_RS32670	0.58	+0.7
2,906,315	-				+0.6
2,906,370	+		BPHYT_RS32670	0.65	-1.3