Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27940

Experiment: 24hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27935 and BPHYT_RS27940 are separated by 102 nucleotidesBPHYT_RS27940 and BPHYT_RS27945 are separated by 302 nucleotides BPHYT_RS27935: BPHYT_RS27935 - PadR family transcriptional regulator, at 1,833,472 to 1,834,335 _RS27935 BPHYT_RS27940: BPHYT_RS27940 - FAD-binding protein, at 1,834,438 to 1,835,289 _RS27940 BPHYT_RS27945: BPHYT_RS27945 - dihydroxyacetone kinase, at 1,835,592 to 1,836,581 _RS27945 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -1 0 1 2at 1834.890 kb on + strand, within BPHYT_RS27940at 1835.054 kb on + strand, within BPHYT_RS27940at 1835.099 kb on + strand, within BPHYT_RS27940at 1835.119 kb on + strand, within BPHYT_RS27940at 1835.143 kb on + strand, within BPHYT_RS27940at 1835.783 kb on - strand, within BPHYT_RS27945

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1
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1,834,890 + BPHYT_RS27940 0.53 +0.2
1,835,054 + BPHYT_RS27940 0.72 +1.6
1,835,099 + BPHYT_RS27940 0.78 -0.4
1,835,119 + BPHYT_RS27940 0.80 -1.0
1,835,143 + BPHYT_RS27940 0.83 +2.1
1,835,783 - BPHYT_RS27945 0.19 +1.3

Or see this region's nucleotide sequence