Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26775

Experiment: 24hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26770 and BPHYT_RS26775 are separated by 9 nucleotidesBPHYT_RS26775 and BPHYT_RS26780 are separated by 10 nucleotidesBPHYT_RS26780 and BPHYT_RS26785 are separated by 18 nucleotides BPHYT_RS26770: BPHYT_RS26770 - histidine kinase, at 1,575,698 to 1,576,825 _RS26770 BPHYT_RS26775: BPHYT_RS26775 - chemotaxis protein CheB, at 1,576,835 to 1,577,449 _RS26775 BPHYT_RS26780: BPHYT_RS26780 - chemotaxis protein CheR, at 1,577,460 to 1,578,305 _RS26780 BPHYT_RS26785: BPHYT_RS26785 - chemotaxis protein CheY, at 1,578,324 to 1,581,911 _RS26785 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -2 -1 0 1at 1575.893 kb on - strand, within BPHYT_RS26770at 1576.079 kb on - strand, within BPHYT_RS26770at 1576.244 kb on - strand, within BPHYT_RS26770at 1576.887 kb on + strandat 1577.182 kb on + strand, within BPHYT_RS26775at 1577.461 kb on + strandat 1577.462 kb on - strandat 1577.512 kb on + strandat 1577.623 kb on + strand, within BPHYT_RS26780at 1577.743 kb on + strand, within BPHYT_RS26780at 1577.794 kb on + strand, within BPHYT_RS26780at 1578.074 kb on - strand, within BPHYT_RS26780at 1578.217 kb on + strand, within BPHYT_RS26780at 1578.217 kb on + strand, within BPHYT_RS26780at 1578.217 kb on + strand, within BPHYT_RS26780at 1578.325 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1
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1,575,893 - BPHYT_RS26770 0.17 +0.1
1,576,079 - BPHYT_RS26770 0.34 +0.5
1,576,244 - BPHYT_RS26770 0.48 +1.4
1,576,887 + -1.4
1,577,182 + BPHYT_RS26775 0.56 -2.7
1,577,461 + +0.2
1,577,462 - +0.0
1,577,512 + +1.6
1,577,623 + BPHYT_RS26780 0.19 +1.0
1,577,743 + BPHYT_RS26780 0.33 +0.8
1,577,794 + BPHYT_RS26780 0.39 +0.7
1,578,074 - BPHYT_RS26780 0.73 -1.3
1,578,217 + BPHYT_RS26780 0.89 +1.0
1,578,217 + BPHYT_RS26780 0.89 +1.1
1,578,217 + BPHYT_RS26780 0.89 -1.0
1,578,325 + +0.6

Or see this region's nucleotide sequence