Experiment: 24hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23615 and BPHYT_RS23620 are separated by 67 nucleotides BPHYT_RS23620 and BPHYT_RS23625 are separated by 351 nucleotides BPHYT_RS23625 and BPHYT_RS23630 are separated by 306 nucleotides BPHYT_RS23630 and BPHYT_RS23635 are separated by 177 nucleotides
BPHYT_RS23615: BPHYT_RS23615 - XRE family transcriptional regulator, at 870,088 to 870,771
_RS23615
BPHYT_RS23620: BPHYT_RS23620 - hypothetical protein, at 870,839 to 871,030
_RS23620
BPHYT_RS23625: BPHYT_RS23625 - membrane protein, at 871,382 to 871,936
_RS23625
BPHYT_RS23630: BPHYT_RS23630 - hypothetical protein, at 872,243 to 872,503
_RS23630
BPHYT_RS23635: BPHYT_RS23635 - phosphoesterase, at 872,681 to 874,687
_RS23635
Position (kb) 871
872 Strain fitness (log2 ratio) -1
0
1
2
3 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.638 kb on + strand, within BPHYT_RS23615 at 870.699 kb on - strand, within BPHYT_RS23615 at 871.316 kb on - strand at 871.316 kb on - strand at 871.500 kb on + strand, within BPHYT_RS23625 at 871.566 kb on + strand, within BPHYT_RS23625 at 871.626 kb on + strand, within BPHYT_RS23625 at 871.626 kb on + strand, within BPHYT_RS23625 at 872.004 kb on + strand at 872.004 kb on + strand at 872.005 kb on - strand at 872.188 kb on + strand at 872.188 kb on + strand at 872.275 kb on + strand at 872.275 kb on + strand, within BPHYT_RS23630 at 872.411 kb on + strand, within BPHYT_RS23630 at 872.412 kb on - strand, within BPHYT_RS23630 at 872.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1 remove 870,508 + BPHYT_RS23615 0.61 +0.8 870,508 + BPHYT_RS23615 0.61 +0.5 870,638 + BPHYT_RS23615 0.80 +0.6 870,699 - BPHYT_RS23615 0.89 +1.3 871,316 - -0.1 871,316 - -0.6 871,500 + BPHYT_RS23625 0.21 -1.3 871,566 + BPHYT_RS23625 0.33 -0.0 871,626 + BPHYT_RS23625 0.44 -0.4 871,626 + BPHYT_RS23625 0.44 -1.5 872,004 + +0.2 872,004 + +3.7 872,005 - -0.7 872,188 + -1.7 872,188 + -0.4 872,275 + +2.3 872,275 + BPHYT_RS23630 0.12 +0.6 872,411 + BPHYT_RS23630 0.64 +0.6 872,412 - BPHYT_RS23630 0.65 +0.1 872,633 + -0.2
Or see this region's nucleotide sequence