Experiment: 24hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23185 and BPHYT_RS23190 overlap by 4 nucleotides BPHYT_RS23190 and BPHYT_RS23195 are separated by 116 nucleotides BPHYT_RS23195 and BPHYT_RS23200 are separated by 319 nucleotides BPHYT_RS23200 and BPHYT_RS23205 are separated by 183 nucleotides
BPHYT_RS23185: BPHYT_RS23185 - MFS transporter, at 767,651 to 768,847
_RS23185
BPHYT_RS23190: BPHYT_RS23190 - MarR family transcriptional regulator, at 768,844 to 769,377
_RS23190
BPHYT_RS23195: BPHYT_RS23195 - cytochrome P460, at 769,494 to 770,513
_RS23195
BPHYT_RS23200: BPHYT_RS23200 - cupin, at 770,833 to 771,249
_RS23200
BPHYT_RS23205: BPHYT_RS23205 - alkylhydroperoxidase, at 771,433 to 772,038
_RS23205
Position (kb) 769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 769.039 kb on + strand, within BPHYT_RS23190 at 769.655 kb on + strand, within BPHYT_RS23195 at 769.945 kb on + strand, within BPHYT_RS23195 at 770.203 kb on + strand, within BPHYT_RS23195 at 770.213 kb on - strand, within BPHYT_RS23195 at 770.217 kb on - strand, within BPHYT_RS23195 at 770.291 kb on - strand, within BPHYT_RS23195 at 770.366 kb on - strand, within BPHYT_RS23195 at 770.493 kb on - strand at 770.672 kb on + strand at 771.111 kb on + strand, within BPHYT_RS23200 at 771.113 kb on + strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.322 kb on + strand at 771.391 kb on - strand at 771.404 kb on + strand at 771.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1 remove 769,039 + BPHYT_RS23190 0.37 +2.7 769,655 + BPHYT_RS23195 0.16 -0.7 769,945 + BPHYT_RS23195 0.44 +1.4 770,203 + BPHYT_RS23195 0.70 -0.5 770,213 - BPHYT_RS23195 0.70 -0.1 770,217 - BPHYT_RS23195 0.71 +0.2 770,291 - BPHYT_RS23195 0.78 +0.2 770,366 - BPHYT_RS23195 0.85 +1.2 770,493 - -0.3 770,672 + -0.5 771,111 + BPHYT_RS23200 0.67 -3.0 771,113 + BPHYT_RS23200 0.67 -0.5 771,114 - BPHYT_RS23200 0.67 +0.8 771,114 - BPHYT_RS23200 0.67 -1.6 771,114 - BPHYT_RS23200 0.67 +0.6 771,114 - BPHYT_RS23200 0.67 -0.5 771,322 + -1.1 771,391 - -0.4 771,404 + -1.0 771,405 - -1.3
Or see this region's nucleotide sequence