Experiment: 24hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22020 and BPHYT_RS22025 are separated by 51 nucleotides BPHYT_RS22025 and BPHYT_RS22030 are separated by 176 nucleotides
BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143
_RS22020
BPHYT_RS22025: BPHYT_RS22025 - porin, at 496,195 to 497,784
_RS22025
BPHYT_RS22030: BPHYT_RS22030 - peptide ABC transporter ATP-binding protein, at 497,961 to 498,986
_RS22030
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1
2 at 495.226 kb on - strand at 495.572 kb on + strand, within BPHYT_RS22020 at 495.841 kb on + strand, within BPHYT_RS22020 at 496.262 kb on + strand at 496.332 kb on - strand at 496.506 kb on - strand, within BPHYT_RS22025 at 496.522 kb on - strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.587 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.748 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.851 kb on - strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.928 kb on + strand, within BPHYT_RS22025 at 497.109 kb on - strand, within BPHYT_RS22025 at 497.148 kb on - strand, within BPHYT_RS22025 at 497.342 kb on + strand, within BPHYT_RS22025 at 497.375 kb on + strand, within BPHYT_RS22025 at 497.640 kb on + strand at 497.681 kb on + strand at 497.789 kb on + strand at 497.963 kb on - strand at 498.200 kb on - strand, within BPHYT_RS22030 at 498.221 kb on - strand, within BPHYT_RS22030 at 498.263 kb on - strand, within BPHYT_RS22030 at 498.693 kb on - strand, within BPHYT_RS22030
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1 remove 495,226 - +1.2 495,572 + BPHYT_RS22020 0.35 +0.3 495,841 + BPHYT_RS22020 0.66 +0.6 496,262 + -0.1 496,332 - +1.6 496,506 - BPHYT_RS22025 0.20 -0.1 496,522 - BPHYT_RS22025 0.21 -1.1 496,559 + BPHYT_RS22025 0.23 +1.4 496,559 + BPHYT_RS22025 0.23 -0.2 496,587 - BPHYT_RS22025 0.25 +0.2 496,591 - BPHYT_RS22025 0.25 +2.4 496,591 - BPHYT_RS22025 0.25 +0.4 496,748 + BPHYT_RS22025 0.35 +0.2 496,850 + BPHYT_RS22025 0.41 +0.5 496,850 + BPHYT_RS22025 0.41 +0.0 496,851 - BPHYT_RS22025 0.41 +0.3 496,898 + BPHYT_RS22025 0.44 +0.0 496,898 + BPHYT_RS22025 0.44 +1.0 496,898 + BPHYT_RS22025 0.44 +1.6 496,928 + BPHYT_RS22025 0.46 +0.6 497,109 - BPHYT_RS22025 0.57 +0.3 497,148 - BPHYT_RS22025 0.60 -0.5 497,342 + BPHYT_RS22025 0.72 +0.4 497,375 + BPHYT_RS22025 0.74 -1.1 497,640 + -0.4 497,681 + -0.1 497,789 + -1.7 497,963 - +0.2 498,200 - BPHYT_RS22030 0.23 +0.0 498,221 - BPHYT_RS22030 0.25 +0.2 498,263 - BPHYT_RS22030 0.29 +0.1 498,693 - BPHYT_RS22030 0.71 -0.8
Or see this region's nucleotide sequence