Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17695

Experiment: 24hr PHYTO10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO10 MOI 1
3,997,188	+				-1.0
3,997,188	+				+0.2
3,997,188	+				-0.4
3,997,189	-				+0.6
3,997,232	+				+0.2
3,997,232	+				-2.1
3,997,233	-				+0.7
3,997,233	-				-1.1
3,997,233	-				-0.8
3,997,233	-				-0.2
3,997,233	-				-0.9
3,997,334	-				-0.4
3,997,337	-				+0.2
3,997,337	-				+0.0
3,997,387	+				-1.0
3,997,387	+				-0.5
3,997,388	-				-1.6
3,997,410	+				-1.1
3,997,411	-				-1.6
3,997,411	-				+0.6
3,997,411	-				-0.0
3,997,548	+		BPHYT_RS17690	0.13	-0.2
3,997,583	+		BPHYT_RS17690	0.19	-0.2
3,997,583	+		BPHYT_RS17690	0.19	-0.5
3,997,583	+		BPHYT_RS17690	0.19	-0.5
3,997,583	+		BPHYT_RS17690	0.19	+1.0
3,997,628	+		BPHYT_RS17690	0.26	+1.2
3,997,628	+		BPHYT_RS17690	0.26	+0.0
3,997,628	+		BPHYT_RS17690	0.26	+0.1
3,997,628	+		BPHYT_RS17690	0.26	-0.5
3,997,629	-		BPHYT_RS17690	0.26	-0.2
3,997,629	-		BPHYT_RS17690	0.26	-0.3
3,997,629	-		BPHYT_RS17690	0.26	+0.7
3,997,631	+		BPHYT_RS17690	0.26	-0.2
3,997,632	-		BPHYT_RS17690	0.26	-2.1
3,997,646	+		BPHYT_RS17690	0.29	-0.4
3,998,112	-				+0.2
3,998,199	-		BPHYT_RS17695	0.16	-0.3
3,998,199	-		BPHYT_RS17695	0.16	-1.0
3,998,302	+		BPHYT_RS17695	0.33	-1.3
3,998,303	-		BPHYT_RS17695	0.33	-0.8
3,998,303	-		BPHYT_RS17695	0.33	-1.9
3,998,303	-		BPHYT_RS17695	0.33	-1.3
3,998,303	-		BPHYT_RS17695	0.33	-1.6
3,998,327	-		BPHYT_RS17695	0.37	+0.9
3,998,612	+		BPHYT_RS17695	0.82	+0.1
3,998,612	+		BPHYT_RS17695	0.82	-1.5
3,998,613	-		BPHYT_RS17695	0.83	-2.4
3,998,613	-		BPHYT_RS17695	0.83	-0.2
3,998,613	-		BPHYT_RS17695	0.83	-1.3
3,998,699	+				-0.5
3,998,700	-				-0.2
3,998,765	+				+0.4
3,998,779	+				-0.7
3,998,802	-				-0.0
3,998,802	-				-0.1
3,999,104	+		BPHYT_RS17700	0.52	-0.1
3,999,105	-		BPHYT_RS17700	0.52	+0.3
3,999,132	+		BPHYT_RS17700	0.56	-0.0
3,999,133	-		BPHYT_RS17700	0.57	+0.6
3,999,133	-		BPHYT_RS17700	0.57	+1.2
3,999,175	-		BPHYT_RS17700	0.64	+0.1
3,999,175	-		BPHYT_RS17700	0.64	-1.3
3,999,408	+				+0.2
3,999,409	-				-1.1
3,999,409	-				-0.1
3,999,409	-				-2.4
3,999,422	+				+0.6
3,999,422	+				-0.2
3,999,423	-				+0.3
3,999,423	-				-1.6
3,999,453	+				+0.0
3,999,453	+				+0.4
3,999,454	-				-0.1
3,999,454	-				-2.1
3,999,600	-				-0.1
3,999,600	-				-0.5
3,999,633	+		BPHYT_RS17705	0.12	+0.2
3,999,634	-		BPHYT_RS17705	0.12	-0.2