Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15845

Experiment: 24hr PHYTO10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO10 MOI 1
3,596,284	-				+0.5
3,596,284	-				+0.5
3,596,284	-				+0.1
3,596,296	+				-0.1
3,596,308	-				-0.4
3,596,375	-		BPHYT_RS15840	0.14	-1.8
3,596,490	+		BPHYT_RS15840	0.32	-0.8
3,596,490	+		BPHYT_RS15840	0.32	-0.6
3,596,491	-		BPHYT_RS15840	0.32	+0.1
3,596,527	+		BPHYT_RS15840	0.38	+0.1
3,596,527	+		BPHYT_RS15840	0.38	-1.1
3,596,546	-		BPHYT_RS15840	0.40	+0.0
3,596,747	-		BPHYT_RS15840	0.71	-0.6
3,596,860	+		BPHYT_RS15840	0.89	-0.2
3,596,914	+				-1.4
3,596,925	+				-0.7
3,596,926	-				-0.3
3,596,926	-				-0.8
3,596,930	-				-1.3
3,596,961	+				-0.5
3,597,210	-				-0.1
3,597,270	+				+0.2
3,597,329	-		BPHYT_RS15845	0.11	+1.0
3,597,346	+		BPHYT_RS15845	0.12	-0.0
3,597,632	-		BPHYT_RS15845	0.32	+0.6
3,597,748	-		BPHYT_RS15845	0.40	+0.2
3,597,901	+		BPHYT_RS15845	0.51	+2.5
3,597,991	+		BPHYT_RS15845	0.57	+0.8
3,597,991	+		BPHYT_RS15845	0.57	-0.0
3,597,992	-		BPHYT_RS15845	0.57	-0.1
3,597,992	-		BPHYT_RS15845	0.57	+0.8
3,598,582	-				-0.1
3,598,764	+				-0.3
3,598,765	-				-1.1
3,598,765	-				-0.3
3,598,765	-				-1.2
3,598,765	-				-0.4
3,598,848	+				+0.2
3,598,849	-				+0.6
3,598,849	-				+1.5
3,598,878	+				-1.4
3,598,879	-				-0.2
3,598,879	-				-0.6
3,599,065	-		BPHYT_RS15850	0.19	+0.3
3,599,068	-		BPHYT_RS15850	0.19	-0.4
3,599,082	+		BPHYT_RS15850	0.20	-0.3
3,599,082	+		BPHYT_RS15850	0.20	+0.5
3,599,083	-		BPHYT_RS15850	0.20	-0.8
3,599,120	-		BPHYT_RS15850	0.22	-1.8
3,599,140	+		BPHYT_RS15850	0.23	-0.8
3,599,190	+		BPHYT_RS15850	0.26	-1.5
3,599,190	+		BPHYT_RS15850	0.26	+0.1
3,599,190	+		BPHYT_RS15850	0.26	-1.4
3,599,190	+		BPHYT_RS15850	0.26	+0.6
3,599,190	+		BPHYT_RS15850	0.26	+0.1
3,599,190	+		BPHYT_RS15850	0.26	+0.3
3,599,190	+		BPHYT_RS15850	0.26	-2.2
3,599,191	-		BPHYT_RS15850	0.26	+0.4
3,599,191	-		BPHYT_RS15850	0.26	+0.2
3,599,191	-		BPHYT_RS15850	0.26	-1.0
3,599,191	-		BPHYT_RS15850	0.26	-1.2
3,599,191	-		BPHYT_RS15850	0.26	+0.9
3,599,194	+		BPHYT_RS15850	0.26	-1.0
3,599,194	+		BPHYT_RS15850	0.26	-0.3
3,599,194	+		BPHYT_RS15850	0.26	-0.6
3,599,195	-		BPHYT_RS15850	0.26	-0.1
3,599,195	-		BPHYT_RS15850	0.26	+0.1
3,599,195	-		BPHYT_RS15850	0.26	+0.3
3,599,195	-		BPHYT_RS15850	0.26	+0.1
3,599,195	-		BPHYT_RS15850	0.26	+0.4
3,599,334	+		BPHYT_RS15850	0.34	+0.0
3,599,334	+		BPHYT_RS15850	0.34	-0.1
3,599,334	+		BPHYT_RS15850	0.34	+1.2
3,599,454	+				-0.6
3,599,455	-		BPHYT_RS15850	0.41	-1.2
3,599,455	-		BPHYT_RS15850	0.41	+0.9
3,599,455	-		BPHYT_RS15850	0.41	+0.0
3,599,565	+		BPHYT_RS15850	0.47	-0.4
3,599,566	-		BPHYT_RS15850	0.47	+0.5
3,599,566	-		BPHYT_RS15850	0.47	-0.1
3,599,566	-		BPHYT_RS15850	0.47	+0.0