Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15500

Experiment: 24hr PHYTO10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO10 MOI 1
3,514,865	+		BPHYT_RS15490	0.53	-2.0
3,514,986	-		BPHYT_RS15490	0.62	+2.3
3,514,986	-		BPHYT_RS15490	0.62	-1.4
3,514,991	+		BPHYT_RS15490	0.62	+0.9
3,514,991	+		BPHYT_RS15490	0.62	-1.5
3,515,315	+		BPHYT_RS15490	0.86	-0.3
3,515,316	-		BPHYT_RS15490	0.86	+3.3
3,515,855	+				+0.8
3,515,912	+				-0.7
3,515,912	+				-0.7
3,515,913	-				-0.3
3,515,913	-				+0.1
3,516,188	+		BPHYT_RS15500	0.24	+0.2
3,516,189	-		BPHYT_RS15500	0.24	-0.5
3,516,240	+		BPHYT_RS15500	0.28	+0.1
3,516,241	-		BPHYT_RS15500	0.28	+0.8
3,516,242	+		BPHYT_RS15500	0.28	+1.9
3,516,242	+		BPHYT_RS15500	0.28	+0.1
3,516,242	+		BPHYT_RS15500	0.28	-0.2
3,516,242	+		BPHYT_RS15500	0.28	-1.2
3,516,243	-		BPHYT_RS15500	0.28	-0.2
3,516,243	-		BPHYT_RS15500	0.28	-0.6
3,516,243	-		BPHYT_RS15500	0.28	-0.4
3,516,308	+		BPHYT_RS15500	0.33	-0.4
3,516,329	+		BPHYT_RS15500	0.34	+0.8
3,516,379	-		BPHYT_RS15500	0.38	-1.0
3,516,498	-		BPHYT_RS15500	0.46	+0.7
3,516,893	+		BPHYT_RS15500	0.75	-0.2
3,516,893	+		BPHYT_RS15500	0.75	+0.4
3,516,893	+		BPHYT_RS15500	0.75	+0.3
3,516,894	-		BPHYT_RS15500	0.75	-0.9
3,516,894	-		BPHYT_RS15500	0.75	+0.3
3,516,935	+		BPHYT_RS15500	0.78	-0.2
3,516,992	+		BPHYT_RS15500	0.82	+0.3
3,516,992	+		BPHYT_RS15500	0.82	-0.4
3,516,993	-		BPHYT_RS15500	0.82	+0.4
3,516,993	-		BPHYT_RS15500	0.82	+0.5
3,517,186	-				-0.4
3,517,255	+				-0.4
3,517,256	-				-1.4
3,517,332	-				-0.2
3,517,335	+				+1.2
3,517,335	+				-0.2
3,517,413	+				+1.5
3,517,413	+				-0.1
3,517,413	+				-1.3
3,517,413	+				-0.6
3,517,414	-				-0.5
3,517,651	+		BPHYT_RS15505	0.20	-0.9
3,517,651	+		BPHYT_RS15505	0.20	-1.2
3,517,652	-		BPHYT_RS15505	0.20	+0.6
3,517,652	-		BPHYT_RS15505	0.20	-1.2
3,517,844	+		BPHYT_RS15505	0.39	+1.0
3,518,015	+		BPHYT_RS15505	0.56	-0.2
3,518,015	+		BPHYT_RS15505	0.56	+0.0
3,518,016	-		BPHYT_RS15505	0.56	+0.1