Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12875

Experiment: 24hr PHYTO10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO10 MOI 1
2,936,283	-		BPHYT_RS12870	0.41	-0.9
2,936,438	+		BPHYT_RS12870	0.55	-0.2
2,936,439	-		BPHYT_RS12870	0.55	+0.1
2,936,613	+		BPHYT_RS12870	0.71	+0.3
2,936,846	+				-0.2
2,936,846	+				+0.5
2,936,847	-				+1.3
2,936,858	+				-0.1
2,936,902	-				+1.2
2,936,944	+				-1.6
2,937,158	+				+1.8
2,937,159	-				-0.8
2,937,161	-				+0.5
2,937,182	+				+0.7
2,937,637	-		BPHYT_RS12875	0.18	-1.2
2,937,816	-		BPHYT_RS12875	0.26	-0.8
2,937,821	+		BPHYT_RS12875	0.26	+0.0
2,937,821	+		BPHYT_RS12875	0.26	+0.7
2,937,821	+		BPHYT_RS12875	0.26	-0.6
2,937,822	-		BPHYT_RS12875	0.26	+0.4
2,937,822	-		BPHYT_RS12875	0.26	-0.0
2,937,920	+		BPHYT_RS12875	0.31	-0.8
2,938,370	+		BPHYT_RS12875	0.52	+1.4
2,938,370	+		BPHYT_RS12875	0.52	+0.6
2,938,389	+		BPHYT_RS12875	0.53	-1.1
2,938,523	+		BPHYT_RS12875	0.60	-0.2
2,938,523	+		BPHYT_RS12875	0.60	-0.5
2,938,524	-		BPHYT_RS12875	0.60	-0.6
2,939,132	+		BPHYT_RS12875	0.88	-1.0
2,939,135	+		BPHYT_RS12875	0.89	-0.8
2,939,136	-		BPHYT_RS12875	0.89	+0.7
2,939,141	+				+2.3
2,939,141	+		BPHYT_RS12875	0.89	+0.1
2,939,141	+		BPHYT_RS12875	0.89	+1.5
2,939,141	+		BPHYT_RS12875	0.89	-0.5
2,939,142	-		BPHYT_RS12875	0.89	+2.9
2,939,742	+		BPHYT_RS12880	0.20	-0.5
2,939,817	+		BPHYT_RS12880	0.26	+1.3
2,939,818	-		BPHYT_RS12880	0.26	-0.3
2,939,819	+		BPHYT_RS12880	0.26	-0.4
2,939,819	+		BPHYT_RS12880	0.26	+0.3
2,939,820	-		BPHYT_RS12880	0.26	+0.1
2,939,820	-		BPHYT_RS12880	0.26	-0.2
2,940,008	+		BPHYT_RS12880	0.40	+2.3
2,940,009	-		BPHYT_RS12880	0.41	+0.0
2,940,009	-		BPHYT_RS12880	0.41	-0.5
2,940,009	-		BPHYT_RS12880	0.41	+0.5
2,940,011	+		BPHYT_RS12880	0.41	-0.3
2,940,011	+		BPHYT_RS12880	0.41	-1.3
2,940,012	-		BPHYT_RS12880	0.41	+1.3
2,940,012	-		BPHYT_RS12880	0.41	+0.6
2,940,012	-		BPHYT_RS12880	0.41	-0.1
2,940,171	-		BPHYT_RS12880	0.53	-0.6
2,940,342	-		BPHYT_RS12880	0.66	+1.3