Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08375

Experiment: 24hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08370 and BPHYT_RS08375 are separated by 42 nucleotidesBPHYT_RS08375 and BPHYT_RS08380 are separated by 486 nucleotides BPHYT_RS08370: BPHYT_RS08370 - glyoxalase, at 1,917,751 to 1,918,362 _RS08370 BPHYT_RS08375: BPHYT_RS08375 - enoyl-CoA hydratase, at 1,918,405 to 1,919,268 _RS08375 BPHYT_RS08380: BPHYT_RS08380 - multidrug MFS transporter, at 1,919,755 to 1,921,080 _RS08380 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -2 -1 0 1at 1917.575 kb on - strandat 1917.641 kb on - strandat 1918.105 kb on + strand, within BPHYT_RS08370at 1919.431 kb on - strandat 1919.693 kb on - strandat 1919.871 kb on + strandat 1919.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1
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1,917,575 - -0.2
1,917,641 - +0.7
1,918,105 + BPHYT_RS08370 0.58 +0.7
1,919,431 - -1.8
1,919,693 - +1.7
1,919,871 + -0.3
1,919,872 - +0.8

Or see this region's nucleotide sequence