Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07495

Experiment: 24hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07490 and BPHYT_RS07495 are separated by 22 nucleotidesBPHYT_RS07495 and BPHYT_RS07500 are separated by 117 nucleotides BPHYT_RS07490: BPHYT_RS07490 - aldehyde dehydrogenase, at 1,702,593 to 1,704,029 _RS07490 BPHYT_RS07495: BPHYT_RS07495 - LysR family transcriptional regulator, at 1,704,052 to 1,705,002 _RS07495 BPHYT_RS07500: BPHYT_RS07500 - amidohydrolase, at 1,705,120 to 1,706,292 _RS07500 Position (kb) 1704 1705 1706Strain fitness (log2 ratio) -2 -1 0 1 2at 1703.326 kb on + strand, within BPHYT_RS07490at 1703.555 kb on - strand, within BPHYT_RS07490at 1703.770 kb on - strand, within BPHYT_RS07490at 1703.895 kb on + strandat 1703.914 kb on - strandat 1704.053 kb on + strandat 1705.213 kb on + strandat 1705.268 kb on - strand, within BPHYT_RS07500at 1705.615 kb on - strand, within BPHYT_RS07500at 1705.999 kb on + strand, within BPHYT_RS07500

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1
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1,703,326 + BPHYT_RS07490 0.51 -0.5
1,703,555 - BPHYT_RS07490 0.67 +2.0
1,703,770 - BPHYT_RS07490 0.82 +2.6
1,703,895 + -0.1
1,703,914 - -0.2
1,704,053 + +1.2
1,705,213 + -1.9
1,705,268 - BPHYT_RS07500 0.13 -0.8
1,705,615 - BPHYT_RS07500 0.42 -1.2
1,705,999 + BPHYT_RS07500 0.75 -1.7

Or see this region's nucleotide sequence