Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06775

Experiment: 24hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06770 and BPHYT_RS06775 are separated by 142 nucleotidesBPHYT_RS06775 and BPHYT_RS06780 are separated by 57 nucleotidesBPHYT_RS06780 and BPHYT_RS06785 are separated by 33 nucleotides BPHYT_RS06770: BPHYT_RS06770 - aminotransferase, at 1,531,786 to 1,532,958 _RS06770 BPHYT_RS06775: BPHYT_RS06775 - nucleotide-binding protein, at 1,533,101 to 1,533,598 _RS06775 BPHYT_RS06780: BPHYT_RS06780 - hypothetical protein, at 1,533,656 to 1,534,438 _RS06780 BPHYT_RS06785: BPHYT_RS06785 - hypothetical protein, at 1,534,472 to 1,535,626 _RS06785 Position (kb) 1533 1534Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1532.105 kb on + strand, within BPHYT_RS06770at 1532.105 kb on + strand, within BPHYT_RS06770at 1532.106 kb on - strand, within BPHYT_RS06770at 1532.201 kb on - strand, within BPHYT_RS06770at 1532.201 kb on - strand, within BPHYT_RS06770at 1532.204 kb on + strand, within BPHYT_RS06770at 1532.204 kb on + strand, within BPHYT_RS06770at 1532.224 kb on + strand, within BPHYT_RS06770at 1532.231 kb on + strand, within BPHYT_RS06770at 1532.231 kb on + strand, within BPHYT_RS06770at 1532.231 kb on + strand, within BPHYT_RS06770at 1532.232 kb on - strand, within BPHYT_RS06770at 1532.316 kb on - strand, within BPHYT_RS06770at 1532.316 kb on - strand, within BPHYT_RS06770at 1532.330 kb on + strand, within BPHYT_RS06770at 1532.330 kb on + strand, within BPHYT_RS06770at 1532.561 kb on + strand, within BPHYT_RS06770at 1532.571 kb on - strand, within BPHYT_RS06770at 1532.584 kb on + strand, within BPHYT_RS06770at 1532.584 kb on + strand, within BPHYT_RS06770at 1532.584 kb on + strand, within BPHYT_RS06770at 1532.584 kb on + strand, within BPHYT_RS06770at 1532.674 kb on - strand, within BPHYT_RS06770at 1532.681 kb on + strand, within BPHYT_RS06770at 1532.693 kb on + strand, within BPHYT_RS06770at 1532.989 kb on - strandat 1533.027 kb on + strandat 1533.027 kb on + strandat 1533.111 kb on - strandat 1533.429 kb on + strand, within BPHYT_RS06775at 1533.429 kb on + strand, within BPHYT_RS06775at 1533.429 kb on + strand, within BPHYT_RS06775at 1533.429 kb on + strand, within BPHYT_RS06775at 1533.430 kb on - strand, within BPHYT_RS06775at 1533.434 kb on + strand, within BPHYT_RS06775at 1533.603 kb on + strandat 1533.656 kb on - strandat 1533.661 kb on - strandat 1533.692 kb on + strandat 1533.693 kb on - strandat 1533.917 kb on + strand, within BPHYT_RS06780at 1533.918 kb on - strand, within BPHYT_RS06780at 1533.963 kb on - strand, within BPHYT_RS06780at 1533.998 kb on + strand, within BPHYT_RS06780at 1534.085 kb on + strand, within BPHYT_RS06780at 1534.086 kb on - strand, within BPHYT_RS06780at 1534.313 kb on + strand, within BPHYT_RS06780at 1534.409 kb on + strandat 1534.409 kb on + strandat 1534.410 kb on - strandat 1534.410 kb on - strandat 1534.413 kb on + strandat 1534.436 kb on + strandat 1534.436 kb on + strandat 1534.486 kb on + strandat 1534.487 kb on - strandat 1534.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1
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1,532,105 + BPHYT_RS06770 0.27 +1.2
1,532,105 + BPHYT_RS06770 0.27 -0.2
1,532,106 - BPHYT_RS06770 0.27 -0.2
1,532,201 - BPHYT_RS06770 0.35 +0.3
1,532,201 - BPHYT_RS06770 0.35 -0.3
1,532,204 + BPHYT_RS06770 0.36 +0.2
1,532,204 + BPHYT_RS06770 0.36 +0.1
1,532,224 + BPHYT_RS06770 0.37 +1.0
1,532,231 + BPHYT_RS06770 0.38 -0.5
1,532,231 + BPHYT_RS06770 0.38 -0.8
1,532,231 + BPHYT_RS06770 0.38 -0.5
1,532,232 - BPHYT_RS06770 0.38 +0.7
1,532,316 - BPHYT_RS06770 0.45 -0.4
1,532,316 - BPHYT_RS06770 0.45 -1.0
1,532,330 + BPHYT_RS06770 0.46 -0.9
1,532,330 + BPHYT_RS06770 0.46 +0.2
1,532,561 + BPHYT_RS06770 0.66 -0.6
1,532,571 - BPHYT_RS06770 0.67 +0.3
1,532,584 + BPHYT_RS06770 0.68 -1.6
1,532,584 + BPHYT_RS06770 0.68 +0.7
1,532,584 + BPHYT_RS06770 0.68 +2.8
1,532,584 + BPHYT_RS06770 0.68 -0.3
1,532,674 - BPHYT_RS06770 0.76 +0.3
1,532,681 + BPHYT_RS06770 0.76 +0.0
1,532,693 + BPHYT_RS06770 0.77 -2.2
1,532,989 - -0.5
1,533,027 + -0.9
1,533,027 + +2.5
1,533,111 - -0.1
1,533,429 + BPHYT_RS06775 0.66 +1.3
1,533,429 + BPHYT_RS06775 0.66 +0.7
1,533,429 + BPHYT_RS06775 0.66 -2.0
1,533,429 + BPHYT_RS06775 0.66 +0.2
1,533,430 - BPHYT_RS06775 0.66 +0.2
1,533,434 + BPHYT_RS06775 0.67 +1.5
1,533,603 + -0.7
1,533,656 - +0.1
1,533,661 - -0.3
1,533,692 + +0.9
1,533,693 - -0.1
1,533,917 + BPHYT_RS06780 0.33 +1.0
1,533,918 - BPHYT_RS06780 0.33 -0.8
1,533,963 - BPHYT_RS06780 0.39 +0.2
1,533,998 + BPHYT_RS06780 0.44 -0.0
1,534,085 + BPHYT_RS06780 0.55 -1.3
1,534,086 - BPHYT_RS06780 0.55 +0.8
1,534,313 + BPHYT_RS06780 0.84 +0.2
1,534,409 + -1.2
1,534,409 + +1.4
1,534,410 - -0.5
1,534,410 - -0.1
1,534,413 + -1.3
1,534,436 + -1.8
1,534,436 + -1.0
1,534,486 + +0.5
1,534,487 - -0.4
1,534,487 - +0.2

Or see this region's nucleotide sequence