Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05630

Experiment: 24hr PHYTO10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO10 MOI 1
1,288,144	+				+0.8
1,288,296	+		BPHYT_RS05620	0.72	-1.0
1,288,419	+				+0.5
1,288,447	+				+0.7
1,288,508	+				-0.8
1,288,582	-		BPHYT_RS05625	0.18	-1.7
1,288,722	+		BPHYT_RS05625	0.81	-0.5
1,288,725	-		BPHYT_RS05625	0.82	-1.3
1,288,725	-		BPHYT_RS05625	0.82	-2.4
1,288,761	+				-1.3
1,288,762	-				-0.5
1,288,819	+				-1.7
1,288,820	-				+0.4
1,288,883	+				+0.3
1,288,979	-				+0.4
1,289,274	+		BPHYT_RS05630	0.40	+1.2
1,289,274	+		BPHYT_RS05630	0.40	+0.3
1,289,326	-		BPHYT_RS05630	0.48	+0.3
1,289,419	-		BPHYT_RS05630	0.61	-2.5
1,289,446	-		BPHYT_RS05630	0.65	-0.7
1,289,477	-		BPHYT_RS05630	0.69	+0.6
1,289,477	-		BPHYT_RS05630	0.69	+0.2
1,289,562	-		BPHYT_RS05630	0.81	-0.0
1,289,676	-				-1.2
1,289,682	-				+0.7
1,289,682	-				-0.6
1,289,895	+				-0.2
1,289,955	+		BPHYT_RS05635	0.21	-2.0
1,289,973	+		BPHYT_RS05635	0.28	-0.3
1,289,973	+		BPHYT_RS05635	0.28	-0.4
1,289,973	+		BPHYT_RS05635	0.28	+0.2
1,289,973	+		BPHYT_RS05635	0.28	-1.2
1,290,107	+		BPHYT_RS05635	0.79	-1.1
1,290,117	+		BPHYT_RS05635	0.83	-0.0
1,290,117	+		BPHYT_RS05635	0.83	-1.0
1,290,231	+				-0.2
1,290,239	+				+1.3
1,290,239	+				-0.7
1,290,239	+				-0.9
1,290,393	-		BPHYT_RS05640	0.22	-0.6
1,290,403	+		BPHYT_RS05640	0.23	-0.1
1,290,455	+		BPHYT_RS05640	0.28	+0.8
1,290,466	-		BPHYT_RS05640	0.29	+0.2
1,290,474	+		BPHYT_RS05640	0.29	-0.1
1,290,475	-		BPHYT_RS05640	0.30	-0.3
1,290,475	-		BPHYT_RS05640	0.30	+1.3
1,290,546	-		BPHYT_RS05640	0.36	-2.0
1,290,565	-		BPHYT_RS05640	0.38	-1.9
1,290,584	+		BPHYT_RS05640	0.40	-0.7
1,290,638	+		BPHYT_RS05640	0.45	-0.6
1,290,639	-		BPHYT_RS05640	0.45	+1.6
1,290,642	-		BPHYT_RS05640	0.45	+0.5
1,290,682	+		BPHYT_RS05640	0.49	-0.9
1,290,691	+		BPHYT_RS05640	0.50	-0.3