Experiment: 24hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02450 and BPHYT_RS02455 are separated by 314 nucleotides BPHYT_RS02455 and BPHYT_RS02460 are separated by 41 nucleotides BPHYT_RS02460 and BPHYT_RS02465 overlap by 4 nucleotides
BPHYT_RS02450: BPHYT_RS02450 - hypothetical protein, at 556,254 to 556,700
_RS02450
BPHYT_RS02455: BPHYT_RS02455 - taurine ABC transporter substrate-binding protein, at 557,015 to 557,998
_RS02455
BPHYT_RS02460: BPHYT_RS02460 - nitrate ABC transporter ATP-binding protein, at 558,040 to 558,837
_RS02460
BPHYT_RS02465: BPHYT_RS02465 - taurine ABC transporter permease, at 558,834 to 559,703
_RS02465
Position (kb) 557
558 Strain fitness (log2 ratio) -2
-1
0
1 at 556.070 kb on + strand at 556.073 kb on + strand at 556.677 kb on - strand at 556.677 kb on - strand at 556.701 kb on - strand at 556.901 kb on + strand at 556.931 kb on - strand at 556.931 kb on - strand at 557.147 kb on + strand, within BPHYT_RS02455 at 557.273 kb on - strand, within BPHYT_RS02455 at 557.343 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.575 kb on + strand, within BPHYT_RS02455 at 557.576 kb on - strand, within BPHYT_RS02455 at 557.813 kb on + strand, within BPHYT_RS02455 at 558.129 kb on - strand, within BPHYT_RS02460 at 558.133 kb on - strand, within BPHYT_RS02460 at 558.242 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.515 kb on + strand, within BPHYT_RS02460 at 558.696 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 1 remove 556,070 + -1.0 556,073 + -0.1 556,677 - -0.6 556,677 - -1.9 556,701 - -0.6 556,901 + +0.2 556,931 - +0.1 556,931 - +0.7 557,147 + BPHYT_RS02455 0.13 +0.8 557,273 - BPHYT_RS02455 0.26 -1.2 557,343 + BPHYT_RS02455 0.33 -0.4 557,522 + BPHYT_RS02455 0.52 +1.7 557,522 + BPHYT_RS02455 0.52 -0.1 557,522 + BPHYT_RS02455 0.52 +1.3 557,522 + BPHYT_RS02455 0.52 -0.0 557,524 + BPHYT_RS02455 0.52 +0.1 557,524 + BPHYT_RS02455 0.52 +0.9 557,575 + BPHYT_RS02455 0.57 +0.4 557,576 - BPHYT_RS02455 0.57 -0.2 557,813 + BPHYT_RS02455 0.81 -0.0 558,129 - BPHYT_RS02460 0.11 -0.5 558,133 - BPHYT_RS02460 0.12 -0.1 558,242 + BPHYT_RS02460 0.25 +0.2 558,442 + BPHYT_RS02460 0.50 -1.7 558,442 + BPHYT_RS02460 0.50 -0.2 558,442 + BPHYT_RS02460 0.50 -0.6 558,515 + BPHYT_RS02460 0.60 -1.5 558,696 + BPHYT_RS02460 0.82 +1.0 558,700 + BPHYT_RS02460 0.83 +0.1 558,700 + BPHYT_RS02460 0.83 -0.5 558,700 + BPHYT_RS02460 0.83 -1.8 558,701 - BPHYT_RS02460 0.83 -0.1 558,701 - BPHYT_RS02460 0.83 -0.3 558,701 - BPHYT_RS02460 0.83 -0.9
Or see this region's nucleotide sequence