Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16040

Experiment: 24hr PHYTO10 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16035 and BPHYT_RS16040 are separated by 852 nucleotidesBPHYT_RS16040 and BPHYT_RS16045 overlap by 4 nucleotides BPHYT_RS16035: BPHYT_RS16035 - tryptophan 2,3-dioxygenase, at 3,637,271 to 3,638,203 _RS16035 BPHYT_RS16040: BPHYT_RS16040 - short-chain dehydrogenase, at 3,639,056 to 3,639,793 _RS16040 BPHYT_RS16045: BPHYT_RS16045 - actin, at 3,639,790 to 3,641,334 _RS16045 Position (kb) 3639 3640Strain fitness (log2 ratio) -1 0 1at 3638.104 kb on + strand, within BPHYT_RS16035at 3638.134 kb on + strandat 3639.061 kb on + strandat 3639.846 kb on - strandat 3640.439 kb on + strand, within BPHYT_RS16045at 3640.439 kb on + strand, within BPHYT_RS16045at 3640.513 kb on - strand, within BPHYT_RS16045at 3640.515 kb on - strand, within BPHYT_RS16045

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 10
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3,638,104 + BPHYT_RS16035 0.89 -1.0
3,638,134 + +0.9
3,639,061 + -0.3
3,639,846 - +0.2
3,640,439 + BPHYT_RS16045 0.42 +0.6
3,640,439 + BPHYT_RS16045 0.42 +0.1
3,640,513 - BPHYT_RS16045 0.47 +0.6
3,640,515 - BPHYT_RS16045 0.47 +0.1

Or see this region's nucleotide sequence